RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA280983" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15674386 15674386 PRJNA280983_P_NODE_773_length_852_cov_1.668742_g684_i0 PRJNA280983 773 852 1.668742 14.21768184 Polysphondylium violaceum 133409 Evosea other_Eukaryota 448 6.76e-155   NR KAF2071944.1 133409 g684 i0 77.8 1.98943661971831 284 62 100 1 1 852 75 357 KAF2071944.1 hypothetical protein CYY_006738 [Polysphondylium violaceum] diamond 1695 448 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27327036 27327036 PRJNA280983_P_NODE_483_length_1052_cov_3.755733_g415_i0 PRJNA280983 483 1052 3.755733 39.51031116 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 510 4.6399999999999993e-178   NR PRP72795.1 1890364 g415 i0 66.7 1.00095057034221 351 116 99.8 1 1052 3 62 412 PRP72795.1 hypothetical protein PROFUN_07695 [Planoprotostelium fungivorum] diamond 1053 510 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;