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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA278119" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA278119 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9986799 9986799 PRJNA278119_P_NODE_13068_length_311_cov_1.167939_g12820_i0 PRJNA278119 13068 311 1.167939 3.63229029 Metazoa 33208 Chordata Chordata 90.1 9.63e-20   NR XP_026694101.1 7719 g12820 i0 64.8 29.4694533762058 71 23 67.5 2 102 311 10 79 XP_026694101.1 GTP-binding nuclear protein Ran-like [Ciona intestinalis] diamond 9165 90.9 0.991199119911991 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
22047883 22047883 PRJNA278119_P_NODE_38958_length_167_cov_0.881356_g38709_i0 PRJNA278119 38958 167 0.881356 1.47186452 Oikopleura dioica 34765 Chordata Chordata 88.2 6.93e-19   NR CAG5086348.1 34765 g38709 i0 82.4 2.8562874251497 51 9 91.6 0 10 162 14 64 CAG5086348.1 Oidioi.mRNA.OKI2018_I69.PAR.g11184.t1.cds [Oikopleura dioica] diamond 477 88.2 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
23323578 23323578 PRJNA278119_P_NODE_6079_length_483_cov_2.668203_g5833_i0 PRJNA278119 6079 483 2.668203 12.88742049 Sciurus carolinensis 30640 Chordata Chordata 158 4.88e-45   NR MBZ3878477.1 30640 g5833 i0 53 1.04347826086957 168 67 98.8 3 482 6 62 226 MBZ3878477.1 60S ribosomal protein L15 [Sciurus carolinensis] diamond 504 158 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
23323610 23323610 PRJNA278119_P_NODE_8199_length_414_cov_2.104110_g7952_i0 PRJNA278119 8199 414 2.10411 8.7110154 Oikopleura dioica 34765 Chordata Chordata 117 9.08e-31   NR CAG5105686.1 34765 g7952 i0 52 1.42028985507246 98 47 71 0 336 43 12 109 CAG5105686.1 Oidioi.mRNA.OKI2018_I69.chr1.g2360.t1.cds [Oikopleura dioica] diamond 588 117 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
27154571 27154571 PRJNA278119_P_NODE_18402_length_238_cov_1.000000_g18153_i0 PRJNA278119 18402 238 1 2.38 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 1.07e-27   NR CAB3264621.1 59560 g18153 i0 71.6 7.43697478991597 74 21 93.3 0 9 230 7 80 CAB3264621.1 polyadenylate-binding protein 4-like [Phallusia mammillata] diamond 1770 115 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28495387 28495387 PRJNA278119_P_NODE_20307_length_222_cov_0.901734_g20058_i0 PRJNA278119 20307 222 0.901734 2.00184948 Struthio camelus 8801 Chordata Chordata 43.5 0.00955   NR XP_009674880.2 8801 g20058 i0 39.6 2.01351351351351 53 29 67.6 1 190 41 55 107 XP_009674880.2 placenta-specific gene 8 protein isoform X3 [Struthio camelus] diamond 447 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Struthioniformes Struthionidae Struthio Struthio camelus
28860134 28860134 PRJNA278119_P_NODE_15868_length_267_cov_2.142202_g15619_i0 PRJNA278119 15868 267 2.142202 5.71967934 Metazoa 33208 Chordata Chordata 84.7 1.69e-19   NR TFK03063.1 55544 g15619 i0 60.6 2.9438202247191 66 22 69.7 1 257 72 1 66 TFK03063.1 40S ribosomal protein S29 [Platysternon megacephalum] diamond 786 85.1 0.995299647473561 Eukaryota Opisthokonta Metazoa Chordata   Testudines Platysternidae Platysternon Platysternon megacephalum
29207742 29207742 PRJNA278119_P_NODE_16129_length_264_cov_1.451163_g15880_i0 PRJNA278119 16129 264 1.451163 3.83107032 Metazoa 33208 Chordata Chordata 117 5.01e-30   NR XP_039268154.1 7725 g15880 i0 63.9 19.9545454545455 83 30 94.3 0 1 249 175 257 XP_039268154.1 40S ribosomal protein S4, Y-like [Styela clava] diamond 5268 117 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
29333877 29333877 PRJNA278119_P_NODE_36489_length_168_cov_0.873950_g36240_i0 PRJNA278119 36489 168 0.87395 1.468236 root 1 Root_unresolved Root_unresolved 46.2 8.25e-4   NR XP_028597743.1 64176 g36240 i0 52.3 3.32142857142857 44 20 78.6 1 153 22 32 74 XP_028597743.1 probable protein phosphatase 1N isoform X2 [Podarcis muralis] diamond 558 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis muralis
29523321 29523321 PRJNA278119_P_NODE_46150_length_162_cov_1.840708_g45901_i0 PRJNA278119 46150 162 1.840708 2.98194696 Squamata 8509 Chordata Chordata 90.1 5.33e-21   NR XP_015266013.1 146911 g45901 i0 69.8 10.7222222222222 53 16 98.1 0 160 2 114 166 XP_015266013.1 PREDICTED: sulfiredoxin-1 [Gekko japonicus] diamond 1737 90.9 0.991199119911991 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
29631614 29631614 PRJNA278119_P_NODE_29470_length_182_cov_1.563910_g29221_i0 PRJNA278119 29470 182 1.56391 2.8463162 Phallusia mammillata 59560 Chordata Chordata 60.8 9.16e-10   NR CAB3265748.1 59560 g29221 i0 54.5 2.15934065934066 44 20 72.5 0 3 134 94 137 CAB3265748.1 40S ribosomal protein S12-like [Phallusia mammillata] diamond 393 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
29744060 29744060 PRJNA278119_P_NODE_33030_length_173_cov_1.088710_g32781_i0 PRJNA278119 33030 173 1.08871 1.8834683 root 1 Root_unresolved Root_unresolved 123 5.6e-32   NR XP_036010302.1 10090 g32781 i0 100 14.8265895953757 57 0 98.8 0 1 171 45 101 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 2565 123 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30123229 30123229 PRJNA278119_P_NODE_15772_length_269_cov_1.277273_g15523_i0 PRJNA278119 15772 269 1.277273 3.43586437 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.7 7.64e-19   NR XP_028676068.1 27687 g15523 i0 49.4 12.6133828996283 87 44 97 0 8 268 196 282 XP_028676068.1 actin, cytoplasmic 2-like [Erpetoichthys calabaricus] diamond 3393 90.5 0.991160220994475 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30408039 30408039 PRJNA278119_P_NODE_11693_length_336_cov_1.811847_g11445_i0 PRJNA278119 11693 336 1.811847 6.08780592 Opisthokonta 33154 Chordata Chordata 119 5.989999999999999e-32   NR Q8ISN9.1 7741 g11445 i0 65.6 3.39285714285714 96 33 85.7 0 16 303 13 108 Q8ISN9.1 RecName: Full=Small ribosomal subunit protein eS25; AltName: Full=40S ribosomal protein S25 [Branchiostoma belcheri] diamond 1140 119 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
30611072 30611072 PRJNA278119_P_NODE_19853_length_225_cov_1.017045_g19604_i0 PRJNA278119 19853 225 1.017045 2.28835125 Eleutherodactylus coqui 57060 Chordata Chordata 117 1.32e-30   NR KAG9489525.1 57060 g19604 i0 72.2 3.84 72 20 96 0 217 2 67 138 KAG9489525.1 hypothetical protein GDO78_005484 [Eleutherodactylus coqui] diamond 864 117 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
30800650 30800650 PRJNA278119_P_NODE_27994_length_187_cov_1.130435_g27745_i0 PRJNA278119 27994 187 1.130435 2.11391345 Pristiophorus japonicus 55135 Chordata Chordata 54.7 9.67e-7   NR XP_070720711.1 55135 g27745 i0 43.4 7.52406417112299 53 26 85 1 17 175 131 179 XP_070720711.1 cytosolic 5'-nucleotidase 3A-like [Pristiophorus japonicus] diamond 1407 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
30990487 30990487 PRJNA278119_P_NODE_21354_length_215_cov_1.253012_g21105_i0 PRJNA278119 21354 215 1.253012 2.6939758 Protobothrops mucrosquamatus 103944 Chordata Chordata 57.8 1.37e-8   NR XP_015686127.1 103944 g21105 i0 45.6 3.57209302325581 68 37 94.9 0 206 3 2 69 XP_015686127.1 stress-induced-phosphoprotein 1-like, partial [Protobothrops mucrosquamatus] diamond 768 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Protobothrops Protobothrops mucrosquamatus
31355883 31355883 PRJNA278119_P_NODE_5856_length_493_cov_1.389640_g5610_i0 PRJNA278119 5856 493 1.38964 6.8509252 Chordata 7711 Chordata Chordata 184 3.78e-56   NR XP_069480798.1 8296 g5610 i0 77.2 40.3569979716024 123 28 74.8 0 472 104 57 179 XP_069480798.1 small ribosomal subunit protein eS17 [Ambystoma mexicanum] diamond 19896 185 0.994594594594595 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
31527939 31527939 PRJNA278119_P_NODE_42976_length_164_cov_1.356522_g42727_i0 PRJNA278119 42976 164 1.356522 2.22469608 Balaenoptera physalus 9770 Chordata Chordata 57.8 2.61e-8   NR KAB0406035.1 9770 g42727 i0 76.2 0.768292682926829 42 10 76.8 0 128 3 42 83 KAB0406035.1 hypothetical protein E2I00_012731, partial [Balaenoptera physalus] diamond 126 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
32065539 32065539 PRJNA278119_P_NODE_9978_length_370_cov_1.834891_g9731_i0 PRJNA278119 9978 370 1.834891 6.7890967 Branchiostoma lanceolatum 7740 Chordata Chordata 71.6 1.08e-11   NR CAH1249033.1 7740 g9731 i0 54.8 1.00540540540541 62 27 49.5 1 6 188 340 401 CAH1249033.1 LYG2, partial [Branchiostoma lanceolatum] diamond 372 71.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32209893 32209893 PRJNA278119_P_NODE_15778_length_269_cov_1.181818_g15529_i0 PRJNA278119 15778 269 1.181818 3.17909042 Metazoa 33208 Chordata Chordata 104 1.4500000000000002e-26   NR XP_032814458.1 7757 g15529 i0 67.4 19.8513011152416 89 28 99.3 1 3 269 5 92 XP_032814458.1 60S ribosomal protein L35 isoform X2 [Petromyzon marinus] diamond 5340 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
32540454 32540454 PRJNA278119_P_NODE_35719_length_169_cov_0.866667_g35470_i0 PRJNA278119 35719 169 0.866667 1.46466723 Suncus etruscus 109475 Chordata Chordata 48.9 9.07e-5   NR XP_049636708.1 109475 g35470 i0 50 2.66272189349112 52 23 92.3 2 13 168 252 300 XP_049636708.1 7-methylguanosine phosphate-specific 5'-nucleotidase [Suncus etruscus] diamond 450 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
32620884 32620884 PRJNA278119_P_NODE_45160_length_163_cov_0.912281_g44911_i0 PRJNA278119 45160 163 0.912281 1.48701803 Mammalia 40674 Chordata Chordata 53.9 1.45e-6   NR XP_028923842.1 9258 g44911 i0 97.1 3.16564417177914 34 1 62.6 0 108 7 435 468 XP_028923842.1 tetratricopeptide repeat protein 14 isoform X1 [Ornithorhynchus anatinus] diamond 516 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
32872744 32872744 PRJNA278119_P_NODE_46580_length_162_cov_1.159292_g46331_i0 PRJNA278119 46580 162 1.159292 1.87805304 Chordata 7711 Chordata Chordata 63.2 5.32e-10   NR XP_063138878.1 10116 g46331 i0 56.5 8.98148148148148 46 20 85.2 0 7 144 72 117 XP_063138878.1 transmembrane emp24 domain-containing protein 2-like [Rattus norvegicus] diamond 1455 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;