RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA278119" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA278119 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28337402 28337402 PRJNA278119_P_NODE_38526_length_167_cov_0.881356_g38277_i0 PRJNA278119 38526 167 0.881356 1.47186452 Chlamydia sp. 32-24 1895742 Bacteria Bacteria 72.8 2.64e-13   NR OJU81359.1 1895742 g38277 i0 100 0.610778443113772 34 0 61.1 0 166 65 323 356 OJU81359.1 MAG: hypothetical protein BGO10_07015 [Chlamydia sp. 32-24] diamond 102 72.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia sp. 32-24
31211033 31211033 PRJNA278119_P_NODE_1895_length_897_cov_3.831368_g1697_i0 PRJNA278119 1895 897 3.831368 34.36737096 Chlamydiales bacterium STE3 1910938 Bacteria Bacteria 110 8.289999999999999e-23   NR KAF3362306.1 1910938 g1697 i0 35.9 2.35117056856187 167 94 53.2 6 869 393 561 722 KAF3362306.1 hypothetical protein PHSC3_001135 [Chlamydiales bacterium STE3] diamond 2109 110 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium STE3
31401498 31401498 PRJNA278119_P_NODE_16016_length_266_cov_0.917051_g15767_i0 PRJNA278119 16016 266 0.917051 2.43935566 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 60.5 2.79e-8   NR MBA3721977.1 2052176 g15767 i0 43.6 0.879699248120301 78 42 85.7 1 1 228 311 388 MBA3721977.1 DUF4116 domain-containing protein [Parachlamydiaceae bacterium] diamond 234 60.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32508853 32508853 PRJNA278119_P_NODE_42079_length_165_cov_0.896552_g41830_i0 PRJNA278119 42079 165 0.896552 1.4793108 Candidatus Protochlamydia sp. 2687294 Bacteria Bacteria 77 1.63e-16   NR MBA2368373.1 2687294 g41830 i0 71.7 1.67272727272727 46 13 83.6 0 28 165 1 46 MBA2368373.1 type II toxin-antitoxin system PemK/MazF family toxin [Candidatus Protochlamydia sp.] diamond 276 77 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;