RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA278119" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27326988 27326988 PRJNA278119_P_NODE_12323_length_324_cov_3.141818_g12075_i0 PRJNA278119 12323 324 3.1418180000000002 10.17949032 Helicobacter pylori 210 Bacteria Bacteria 57.8 1.83e-8   NR GAA6953508.1 210 g12075 i0 75 0.296296296296296 32 8 29.6 0 265 170 1 32 GAA6953508.1 hypothetical protein Kyoto211A_0720 [Helicobacter pylori] diamond 96 57.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31243076 31243076 PRJNA278119_P_NODE_24395_length_200_cov_1.225166_g24146_i0 PRJNA278119 24395 200 1.225166 2.450332 Campylobacter sp. 205 Bacteria Bacteria 39.7 0.0312   NR WP_407932432.1 205 g24146 i0 64 0.375 25 9 37.5 0 195 121 1 25 WP_407932432.1 BspA family leucine-rich repeat surface protein, partial [Campylobacter sp.] diamond 75 39.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp.
32886492 32886492 PRJNA278119_P_NODE_28680_length_185_cov_1.147059_g28431_i0 PRJNA278119 28680 185 1.147059 2.12205915 Helicobacter pylori 210 Bacteria Bacteria 44.7 2.57e-4   NR GAA8766134.1 210 g28431 i0 90.5 0.340540540540541 21 2 34.1 0 108 170 1 21 GAA8766134.1 hypothetical protein Kyoto147A_4290 [Helicobacter pylori] diamond 63 44.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;