RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA278119" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA278119 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28842411 28842411 PRJNA278119_P_NODE_38428_length_167_cov_0.881356_g38179_i0 PRJNA278119 38428 167 0.881356 1.47186452 Synergistaceae bacterium 2053624 Bacteria Bacteria 57 1.23e-7   NR MBQ7220420.1 2053624 g38179 i0 57.9 0.682634730538922 38 16 68.3 0 114 1 32 69 MBQ7220420.1 SEL1-like repeat protein [Synergistaceae bacterium] diamond 114 57 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31450743 31450743 PRJNA278119_P_NODE_21636_length_213_cov_1.420732_g21387_i0 PRJNA278119 21636 213 1.420732 3.02615916 Deinococcus 1298 Bacteria Bacteria 83.2 7.17e-18   NR WP_103130110.1 200253 g21387 i0 58.9 7.05633802816901 73 26 98.6 3 211 2 66 137 WP_103130110.1 hypothetical protein [Deinococcus aerius] diamond 1503 83.6 0.995215311004785 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aerius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;