RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA274362" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA274362 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28084674 28084674 PRJNA274362_S_NODE_23285_length_194_cov_0.882759_g23165_i0 PRJNA274362 23285 194 0.882759 1.71255246 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 45.8 0.00152   NR PYJ00909.1 2026799 g23165 i0 54.1 2.33505154639175 37 16 55.7 1 176 69 258 294 PYJ00909.1 MAG: alpha/beta hydrolase [Verrucomicrobiota bacterium] diamond 453 45.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32540424 32540424 PRJNA274362_S_NODE_23079_length_194_cov_1.765517_g22959_i0 PRJNA274362 23079 194 1.765517 3.42510298 Limisphaera ngatamarikiensis 1324935 Bacteria Bacteria 97.4 2.32e-22   NR WP_165108057.1 1324935 g22959 i0 74.6 3.92783505154639 63 16 97.4 0 192 4 12 74 WP_165108057.1 malate dehydrogenase [Limisphaera ngatamarikiensis] diamond 762 97.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Limisphaeraceae Limisphaera Limisphaera ngatamarikiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;