RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA274362" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA274362 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15673633 15673633 PRJNA274362_S_NODE_773_length_838_cov_2.569075_g703_i0 PRJNA274362 773 838 2.569075 21.5288485 Metazoa 33208 Echinodermata other_Eukaryota 236 5.81e-71   NR XP_022088858.1 133434 g703 i0 74 27.5727923627685 150 39 53.7 0 1 450 311 460 XP_022088858.1 elongation factor 1-alpha [Acanthaster planci] diamond 23106 236 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
26775454 26775454 PRJNA274362_S_NODE_4961_length_374_cov_2.775385_g4841_i0 PRJNA274362 4961 374 2.775385 10.3799399 Metazoa 33208 Echinodermata other_Eukaryota 149 9.24e-44   NR XP_033632396.1 7604 g4841 i0 67.3 13.2032085561497 113 37 90.6 0 343 5 5 117 XP_033632396.1 60S ribosomal protein L31-like [Asterias rubens] diamond 4938 150 0.993333333333333 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27832108 27832108 PRJNA274362_S_NODE_1784_length_599_cov_1.923636_g1676_i0 PRJNA274362 1784 599 1.923636 11.52257964 Anneissia japonica 1529436 Echinodermata other_Eukaryota 103 1.1e-22   NR XP_033117238.1 1529436 g1676 i0 83.3 1.14190317195326 54 9 27 0 3 164 240 293 XP_033117238.1 ADP/ATP translocase 1-like [Anneissia japonica] diamond 684 103 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
29554685 29554685 PRJNA274362_S_NODE_16290_length_224_cov_1.382857_g16170_i0 PRJNA274362 16290 224 1.382857 3.09759968 Metazoa 33208 Echinodermata other_Eukaryota 93.6 1.46e-22   NR XP_033641585.1 7604 g16170 i0 69.4 5.31696428571429 72 22 96.4 0 2 217 50 121 XP_033641585.1 40S ribosomal protein S25-like [Asterias rubens] diamond 1191 93.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
32823716 32823716 PRJNA274362_S_NODE_16440_length_223_cov_1.649425_g16320_i0 PRJNA274362 16440 223 1.649425 3.67821775 Asterias rubens 7604 Echinodermata other_Eukaryota 115 3.52e-30   NR XP_033640423.1 7604 g16320 i0 75.7 1.99103139013453 74 18 99.6 0 223 2 56 129 XP_033640423.1 60S ribosomal protein L19-like [Asterias rubens] diamond 444 115 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;