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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA274362" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA274362 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2921473 2921473 PRJNA274362_S_NODE_35943_length_164_cov_0.904348_g35823_i0 PRJNA274362 35943 164 0.904348 1.48313072 Chordata 7711 Chordata Chordata 112 9.959999999999999e-29   NR XP_038662558.1 7830 g35823 i0 85.2 34.2256097560976 54 8 98.8 0 1 162 213 266 XP_038662558.1 cytochrome b-c1 complex subunit Rieske, mitochondrial [Scyliorhinus canicula] diamond 5613 112 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
8023966 8023966 PRJNA274362_S_NODE_2567_length_509_cov_2.332609_g2450_i0 PRJNA274362 2567 509 2.332609 11.87297981 Opisthokonta 33154 Chordata Chordata 130 4.09e-34   NR XP_019638574.1 7741 g2450 i0 56.5 3.18860510805501 138 58 80.7 2 509 99 108 244 XP_019638574.1 PREDICTED: 40S ribosomal protein S6 [Branchiostoma belcheri] diamond 1623 130 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
11849195 11849195 PRJNA274362_S_NODE_23710_length_192_cov_1.454545_g23590_i0 PRJNA274362 23710 192 1.454545 2.7927264 Chordata 7711 Chordata Chordata 114 1.76e-30   NR NP_001027678.1 7719 g23590 i0 93.1 16.453125 58 4 90.6 0 17 190 1 58 NP_001027678.1 small ribosomal subunit protein uS15 [Ciona intestinalis] diamond 3159 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
22046981 22046981 PRJNA274362_S_NODE_19598_length_208_cov_0.981132_g19478_i0 PRJNA274362 19598 208 0.981132 2.04075456 Heptranchias perlo 212740 Chordata Chordata 115 5.56e-29   NR XP_067845628.1 212740 g19478 i0 78.3 13.9326923076923 69 15 99.5 0 1 207 116 184 XP_067845628.1 malate dehydrogenase 1Ab, NAD (soluble) [Heptranchias perlo] diamond 2898 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
26789350 26789350 PRJNA274362_S_NODE_37461_length_162_cov_0.920354_g37341_i0 PRJNA274362 37461 162 0.920354 1.49097348 Styela clava 7725 Chordata Chordata 59.3 1.82e-8   NR XP_039248744.1 7725 g37341 i0 65.2 2.62962962962963 46 16 85.2 0 16 153 1566 1611 XP_039248744.1 rootletin-like isoform X3 [Styela clava] diamond 426 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
28179238 28179238 PRJNA274362_S_NODE_37086_length_162_cov_1.840708_g36966_i0 PRJNA274362 37086 162 1.840708 2.98194696 Branchiostoma belcheri 7741 Chordata Chordata 55.8 7.58e-8   NR XP_019642967.1 7741 g36966 i0 52.5 2.96296296296296 40 19 74.1 0 1 120 114 153 XP_019642967.1 PREDICTED: eukaryotic translation initiation factor 5A-1-like [Branchiostoma belcheri] diamond 480 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
28432120 28432120 PRJNA274362_S_NODE_37466_length_162_cov_0.920354_g37346_i0 PRJNA274362 37466 162 0.920354 1.49097348 Suncus etruscus 109475 Chordata Chordata 68.6 5.02e-12   NR XP_049637544.1 109475 g37346 i0 63 106.962962962963 54 20 100 0 1 162 84 137 XP_049637544.1 LOW QUALITY PROTEIN: YEATS domain-containing protein 4-like [Suncus etruscus] diamond 17328 68.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
29063676 29063676 PRJNA274362_S_NODE_16648_length_222_cov_1.456647_g16528_i0 PRJNA274362 16648 222 1.456647 3.23375634 Vombatus ursinus 29139 Chordata Chordata 85.1 5.8e-18   NR XP_027699060.1 29139 g16528 i0 59.4 2.55405405405405 64 24 83.8 1 35 220 11 74 XP_027699060.1 chymotrypsinogen B-like [Vombatus ursinus] diamond 567 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Vombatidae Vombatus Vombatus ursinus
29302297 29302297 PRJNA274362_S_NODE_21869_length_199_cov_1.040000_g21749_i0 PRJNA274362 21869 199 1.04 2.0696 Branchiostoma 7737 Chordata Chordata 81.3 5.42e-16   NR XP_035687059.1 7739 g21749 i0 60.6 3.01507537688442 66 25 98 1 2 196 34 99 XP_035687059.1 polyamine oxidase 7-like [Branchiostoma floridae] diamond 600 81.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29586146 29586146 PRJNA274362_S_NODE_4590_length_389_cov_1.355882_g4470_i0 PRJNA274362 4590 389 1.355882 5.27438098 Metazoa 33208 Chordata Chordata 58.5 5.24e-7   NR XP_064286476.1 48849 g4470 i0 47.8 5.69151670951157 67 34 51.7 1 2 202 401 466 XP_064286476.1 voltage-dependent anion-selective channel protein 2 [Passer domesticus] diamond 2214 58.9 0.99320882852292 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passeridae Passer Passer domesticus
29680844 29680844 PRJNA274362_S_NODE_33970_length_166_cov_1.333333_g33850_i0 PRJNA274362 33970 166 1.333333 2.21333278 Opisthokonta 33154 Chordata Chordata 98.2 4.959999999999999e-23   NR XP_032830674.1 7757 g33850 i0 79.6 18.5602409638554 54 11 97.6 0 162 1 37 90 XP_032830674.1 40S ribosomal protein SA [Petromyzon marinus] diamond 3081 98.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
29884671 29884671 PRJNA274362_S_NODE_16351_length_224_cov_1.074286_g16231_i0 PRJNA274362 16351 224 1.074286 2.40640064 Callorhinchus milii 7868 Chordata Chordata 78.2 3.92e-15   NR NP_001279040.1 7868 g16231 i0 59.5 9.91071428571429 74 23 99.1 1 222 1 217 283 NP_001279040.1 60S ribosomal protein L5b [Callorhinchus milii] diamond 2220 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
30105543 30105543 PRJNA274362_S_NODE_1112_length_728_cov_2.416789_g1026_i0 PRJNA274362 1112 728 2.416789 17.59422392 Styela clava 7725 Chordata Chordata 175 8.329999999999999e-52   NR XP_039257366.1 7725 g1026 i0 58.2 2.18406593406593 141 59 58.1 0 635 213 1 141 XP_039257366.1 40S ribosomal protein S12-like [Styela clava] diamond 1590 175 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30597161 30597161 PRJNA274362_S_NODE_36333_length_163_cov_1.403509_g36213_i0 PRJNA274362 36333 163 1.403509 2.28771967 Anura 8342 Chordata Chordata 66.2 6.28e-11   NR MEE6481935.1 8439 g36213 i0 66.7 20.6503067484663 51 17 93.9 0 163 11 176 226 MEE6481935.1 hypothetical protein [Ascaphus truei] diamond 3366 66.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
30863848 30863848 PRJNA274362_S_NODE_14714_length_234_cov_1.259459_g14594_i0 PRJNA274362 14714 234 1.259459 2.9471340600000002 Branchiostoma floridae 7739 Chordata Chordata 70.5 3.8e-12   NR XP_035669233.1 7739 g14594 i0 73.9 7.78205128205128 46 11 59 1 1 138 273 317 XP_035669233.1 guanine nucleotide-binding protein subunit beta-2-like 1 [Branchiostoma floridae] diamond 1821 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31292386 31292386 PRJNA274362_S_NODE_2935_length_480_cov_1.628770_g2816_i0 PRJNA274362 2935 480 1.62877 7.818096 Opisthokonta 33154 Chordata Chordata 158 1.94e-46   NR XP_066263347.1 7740 g2816 i0 67.3 5.55625 110 36 68.8 0 476 147 7 116 XP_066263347.1 small ribosomal subunit protein eS26-like isoform X2 [Branchiostoma lanceolatum] diamond 2667 159 0.993710691823899 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
31608788 31608788 PRJNA274362_S_NODE_5236_length_365_cov_2.778481_g5116_i0 PRJNA274362 5236 365 2.778481 10.14145565 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 176 2.4499999999999994e-52   NR XP_069097964.1 8319 g5116 i0 78 45.8547945205479 109 24 89.6 0 336 10 1 109 XP_069097964.1 large ribosomal subunit protein uL18B-like [Pleurodeles waltl] diamond 16737 176 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
32146612 32146612 PRJNA274362_S_NODE_35218_length_165_cov_0.896552_g35098_i0 PRJNA274362 35218 165 0.896552 1.4793108 Chordata 7711 Chordata Chordata 79.7 1.17e-15   NR XP_018667949.1 7719 g35098 i0 64.2 4.72727272727273 53 17 94.5 2 163 8 1417 1468 XP_018667949.1 maltase-glucoamylase, intestinal [Ciona intestinalis] diamond 780 80.5 0.990062111801242 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
32872741 32872741 PRJNA274362_S_NODE_37780_length_162_cov_0.867257_g37660_i0 PRJNA274362 37780 162 0.867257 1.40495634 Anura 8342 Chordata Chordata 41.2 0.0428   NR XP_040200730.1 8407 g37660 i0 85.7 3 21 3 38.9 0 99 161 47 67 XP_040200730.1 heterogeneous nuclear ribonucleoprotein A/B isoform X2 [Rana temporaria] diamond 486 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;