RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA274362" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA274362 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23322973 23322973 PRJNA274362_S_NODE_9219_length_284_cov_2.480851_g9099_i0 PRJNA274362 9219 284 2.480851 7.04561684 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 145 7.18e-41   NR KAL3796718.1 29204 g9099 i0 77.6 16.3838028169014 85 17 89.8 1 10 264 179 261 KAL3796718.1 hypothetical protein HJC23_010018 [Cyclotella cryptica] diamond 4653 146 0.993150684931507 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
31450737 31450737 PRJNA274362_S_NODE_35996_length_164_cov_0.904348_g35876_i0 PRJNA274362 35996 164 0.904348 1.48313072 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 91.3 4.34e-20   NR OEU10039.1 635003 g35876 i0 77.8 4.88414634146341 54 12 98.8 0 2 163 80 133 OEU10039.1 cysteine proteinase [Fragilariopsis cylindrus CCMP1102] diamond 801 91.7 0.995637949836423 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;