RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA274362" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Metamonada · 9 ✖

bioproject 1

  • PRJNA274362 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1645367 1645367 PRJNA274362_S_NODE_23802_length_192_cov_1.125874_g23682_i0 PRJNA274362 23802 192 1.125874 2.16167808 Paratrimastix eleionoma 1709329 Preaxostyla other_Eukaryota 71.2 1.7e-13   NR WCZ58425.1 1709329 g23682 i0 54 3.9375 63 29 98.4 0 2 190 94 156 WCZ58425.1 60S ribosomal protein L13a [Paratrimastix eleionoma] diamond 756 71.2 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix eleionoma
1645446 1645446 PRJNA274362_S_NODE_28082_length_179_cov_1.107692_g27962_i0 PRJNA274362 28082 179 1.107692 1.98276868 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 3.19e-25   NR TNJ27353.1 5742 g27962 i0 74.6 16.7430167597765 59 15 98.9 0 3 179 6 64 TNJ27353.1 Ribosomal protein L10 [Giardia muris] diamond 2997 102 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
11849197 11849197 PRJNA274362_S_NODE_23770_length_192_cov_1.328671_g23650_i0 PRJNA274362 23770 192 1.328671 2.55104832 root 1 Root_unresolved Root_unresolved 117 3.2599999999999992e-31   NR AAC33578.1 5722 g23650 i0 81 22.640625 63 12 98.4 0 190 2 20 82 AAC33578.1 cytosolic heat shock protein 70, partial [Trichomonas vaginalis] diamond 4347 118 0.991525423728814 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26757404 26757404 PRJNA274362_S_NODE_12321_length_252_cov_1.931034_g12201_i0 PRJNA274362 12321 252 1.931034 4.86620568 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 64.7 4.22e-10   NR KAJ4454597.1 342808 g12201 i0 43.5 0.821428571428571 69 39 82.1 0 211 5 18 86 KAJ4454597.1 putative actin binding protein [Paratrimastix pyriformis] diamond 207 64.7 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
26884383 26884383 PRJNA274362_S_NODE_37261_length_162_cov_1.345133_g37141_i0 PRJNA274362 37261 162 1.345133 2.17911546 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 100 6.47e-26   NR KAJ3428883.1 1746091 g37141 i0 88.5 0.962962962962963 52 6 96.3 0 161 6 66 117 KAJ3428883.1 hypothetical protein M0812_24219 [Anaeramoeba flamelloides] diamond 156 100 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
27769268 27769268 PRJNA274362_S_NODE_34764_length_165_cov_1.344828_g34644_i0 PRJNA274362 34764 165 1.344828 2.2189662 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 67.4 5.79e-12   NR XP_001326525.1 412133 g34644 i0 57.4 2.94545454545455 54 23 98.2 0 163 2 30 83 XP_001326525.1 universal ribosomal protein uL13 family [Trichomonas vaginalis G3] diamond 486 67.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28905449 28905449 PRJNA274362_S_NODE_32808_length_168_cov_0.873950_g32688_i0 PRJNA274362 32808 168 0.87395 1.468236 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 64.3 3.25e-10   NR XP_068367258.1 1144522 g32688 i0 59.6 0.928571428571429 52 21 92.9 0 9 164 1241 1292 XP_068367258.1 aldehyde oxidase and xanthine dehydrogenase [Tritrichomonas foetus] diamond 156 64.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31243050 31243050 PRJNA274362_S_NODE_18715_length_212_cov_0.914110_g18595_i0 PRJNA274362 18715 212 0.91411 1.9379132 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 109 1.61e-28   NR XP_067763597.1 348837 g18595 i0 68.6 0.990566037735849 70 22 99.1 0 3 212 29 98 XP_067763597.1 Nucleoside diphosphate kinase [Spironucleus salmonicida] diamond 210 109 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
31527906 31527906 PRJNA274362_S_NODE_31716_length_169_cov_1.625000_g31596_i0 PRJNA274362 31716 169 1.625 2.74625 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 80.1 3.27e-16   NR KAG9391051.1 201153 g31596 i0 66.7 0.958579881656805 54 18 95.9 0 167 6 172 225 KAG9391051.1 Ribosomal protein L18/L5 [Carpediemonas membranifera] diamond 162 80.1 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;