RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA270367" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA270367 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13123918 13123918 PRJNA270367_P_NODE_36071_length_180_cov_1.190840_g35866_i0 PRJNA270367 36071 180 1.19084 2.143512 Gymnochlora stellata 67809 SAR_Eukaryotes SAR_Eukaryotes 93.2 5.98e-22   NR ACF24579.1 67809 g35866 i0 76.3 4.9 59 14 98.3 0 179 3 4 62 ACF24579.1 40S ribosomal protein S9 [Gymnochlora stellata] diamond 882 93.2 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Gymnochlora Gymnochlora stellata
21459675 21459675 PRJNA270367_P_NODE_2617_length_856_cov_11.433705_g2445_i0 PRJNA270367 2617 856 11.433705 97.8725148 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 298 2.7599999999999995e-98   NR MES1912193.1 1215613 g2445 i0 67.5 2.47079439252336 234 76 82 0 810 109 6 239 MES1912193.1 60S ribosomal protein L7B [Cercozoa sp. M6MM] diamond 2115 298 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29126939 29126939 PRJNA270367_P_NODE_21669_length_254_cov_1.531707_g21464_i0 PRJNA270367 21669 254 1.531707 3.89053578 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 54.7 1.93e-6   NR MES1916192.1 1215613 g21464 i0 52.6 0.673228346456693 57 25 66.1 2 169 2 22 77 MES1916192.1 hypothetical protein [Cercozoa sp. M6MM] diamond 171 54.7 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31053791 31053791 PRJNA270367_P_NODE_6555_length_530_cov_1.723493_g6359_i0 PRJNA270367 6555 530 1.723493 9.1345129 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 75.1 3.01e-12   NR MES1910010.1 1215613 g6359 i0 54.1 0.418867924528302 74 34 41.9 0 1 222 221 294 MES1910010.1 hypothetical protein [Cercozoa sp. M6MM] diamond 222 75.1 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;