RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA263496 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9297107 9297107 PRJNA263496_P_NODE_13108_length_216_cov_1.526946_g12855_i0 PRJNA263496 13108 216 1.526946 3.29820336 Metazoa 33208 Platyhelminthes Platyhelminthes 120 7.93e-30   NR XP_009169500.1 6198 g12855 i0 83.3 87 72 12 100 0 216 1 299 370 XP_009169500.1 hypothetical protein T265_06066 [Opisthorchis viverrini] diamond 18792 120 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini
28747777 28747777 PRJNA263496_P_NODE_21787_length_166_cov_0.871795_g21534_i0 PRJNA263496 21787 166 0.871795 1.4471797 Echinostoma caproni 27848 Platyhelminthes Platyhelminthes 65.1 2.85e-11   NR VDP28099.1 27848 g21534 i0 83.3 5.94578313253012 36 6 65.1 0 109 2 5 40 VDP28099.1 unnamed protein product [Echinostoma caproni] diamond 987 65.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Echinostoma Echinostoma caproni
32083221 32083221 PRJNA263496_P_NODE_17938_length_184_cov_1.125926_g17685_i0 PRJNA263496 17938 184 1.125926 2.07170384 Platyhelminthes 6157 Platyhelminthes Platyhelminthes 103 3.92e-26   NR KAH8852115.1 6182 g17685 i0 85.2 21.8804347826087 61 9 99.5 0 184 2 107 167 KAH8852115.1 40S ribosomal protein S5a [Schistosoma japonicum] diamond 4026 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;