RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA263496 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29302288 29302288 PRJNA263496_P_NODE_24109_length_163_cov_0.894737_g23856_i0 PRJNA263496 24109 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 52 2.43e-6   NR PAT01453.1 2024899 g23856 i0 67.6 2.6319018404908 34 11 62.6 0 159 58 106 139 PAT01453.1 hypothetical protein CI105_06770 [Candidatus Izimaplasma bacterium ZiA1] diamond 429 52.4 0.99236641221374 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. ZiA1
30249979 30249979 PRJNA263496_P_NODE_18672_length_179_cov_2.646154_g18419_i0 PRJNA263496 18672 179 2.646154 4.73661566 PVC group 1783257 Bacteria Bacteria 75.9 2.79e-14   NR WP_134110546.1 171289 g18419 i0 72.9 29.0782122905028 48 13 80.4 0 12 155 344 391 WP_134110546.1 phosphoglycerate kinase [Mycoplasmopsis mustelae] diamond 5205 76.3 0.99475753604194 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis mustelae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;