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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA263496 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19495137 19495137 PRJNA263496_P_NODE_17816_length_184_cov_1.888889_g17563_i0 PRJNA263496 17816 184 1.888889 3.47555576 Metazoa 33208 Chordata Chordata 102 6.57e-26   NR XP_061416515.1 7753 g17563 i0 85.2 122.005434782609 61 9 99.5 0 1 183 5 65 XP_061416515.1 histone H2A-like [Lethenteron reissneri] diamond 22449 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
26979071 26979071 PRJNA263496_P_NODE_3522_length_466_cov_2.280576_g3269_i0 PRJNA263496 3522 466 2.280576 10.62748416 Echinops telfairi 9371 Chordata Chordata 74.7 2.63e-12   NR XP_012859694.1 9371 g3269 i0 29.1 1.01716738197425 158 92 88.8 3 39 452 291 448 XP_012859694.1 prosaposin [Echinops telfairi] diamond 474 74.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
26996699 26996699 PRJNA263496_P_NODE_24062_length_163_cov_0.894737_g23809_i0 PRJNA263496 24062 163 0.894737 1.45842131 Chondrichthyes 7777 Chordata Chordata 114 2.1699999999999997e-31   NR XP_043567009.1 36176 g23809 i0 98.1 121.251533742331 54 1 99.4 0 162 1 21 74 XP_043567009.1 SUMO-conjugating enzyme UBC9-B [Chiloscyllium plagiosum] diamond 19764 114 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
27154559 27154559 PRJNA263496_P_NODE_22302_length_165_cov_1.672414_g22049_i0 PRJNA263496 22302 165 1.672414 2.7594831 Mammalia 40674 Chordata Chordata 107 1.08e-27   NR XP_036622565.1 9337 g22049 i0 94.4 80.5090909090909 54 3 98.2 0 163 2 37 90 XP_036622565.1 40S ribosomal protein S8-like [Trichosurus vulpecula] diamond 13284 107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
27232041 27232041 PRJNA263496_P_NODE_18003_length_183_cov_2.097015_g17750_i0 PRJNA263496 18003 183 2.097015 3.83753745 Ambystoma mexicanum 8296 Chordata Chordata 114 1.13e-29   NR XP_069491338.1 8296 g17750 i0 96.7 16.5245901639344 60 2 98.4 0 3 182 87 146 XP_069491338.1 small ribosomal subunit protein uS13 [Ambystoma mexicanum] diamond 3024 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
27502721 27502721 PRJNA263496_P_NODE_4603_length_394_cov_1.834783_g4350_i0 PRJNA263496 4603 394 1.834783 7.22904502 Chordata 7711 Chordata Chordata 187 1.72e-52   NR KAK9393753.1 8729 g4350 i0 73.8 13.4695431472081 126 32 95.2 1 377 3 404 529 KAK9393753.1 phosphoglycerate kinase 1 [Crotalus adamanteus] diamond 5307 187 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
28386572 28386572 PRJNA263496_P_NODE_4046_length_428_cov_1.744063_g3793_i0 PRJNA263496 4046 428 1.744063 7.46458964 Chordata 7711 Chordata Chordata 259 3.61e-86   NR KAK9406484.1 8729 g3793 i0 100 41.8948598130841 130 0 91.1 0 3 392 53 182 KAK9406484.1 hypothetical protein NXF25_005258 [Crotalus adamanteus] diamond 17931 259 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
28400480 28400480 PRJNA263496_P_NODE_4366_length_407_cov_3.416201_g4113_i0 PRJNA263496 4366 407 3.416201 13.90393807 Polypterus senegalus 55291 Chordata Chordata 251 4.85e-82   NR KAG2468629.1 55291 g4113 i0 97 29.4103194103194 133 4 98 0 407 9 123 255 KAG2468629.1 RS7 protein, partial [Polypterus senegalus] diamond 11970 253 0.992094861660079 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28495338 28495338 PRJNA263496_P_NODE_16667_length_191_cov_1.077465_g16414_i0 PRJNA263496 16667 191 1.077465 2.05795815 Lerista edwardsae 470340 Chordata Chordata 45.1 0.00283   NR KAJ6665357.1 470340 g16414 i0 95.2 2.30890052356021 21 1 33 0 2 64 395 415 KAJ6665357.1 hypothetical protein lerEdw1_004406 [Lerista edwardsae] diamond 441 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Lerista Lerista edwardsae
28512903 28512903 PRJNA263496_P_NODE_19527_length_175_cov_1.126984_g19274_i0 PRJNA263496 19527 175 1.126984 1.972222 Metazoa 33208 Chordata Chordata 47.8 1.69e-5   NR XP_042523337.1 105255 g19274 i0 51.1 28.9028571428571 47 23 80.6 0 143 3 8 54 XP_042523337.1 60S ribosomal protein L39-like [Dipodomys spectabilis] diamond 5058 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Heteromyidae Dipodomys Dipodomys spectabilis
28923260 28923260 PRJNA263496_P_NODE_10688_length_241_cov_1.328125_g10435_i0 PRJNA263496 10688 241 1.328125 3.20078125 Chordata 7711 Chordata Chordata 150 4.35e-43   NR XP_064408421.1 7897 g10435 i0 100 754.257261410788 79 0 98.3 0 3 239 127 205 XP_064408421.1 nascent polypeptide-associated complex subunit alpha isoform X5 [Latimeria chalumnae] diamond 181776 150 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
29049814 29049814 PRJNA263496_P_NODE_7848_length_286_cov_1.641350_g7595_i0 PRJNA263496 7848 286 1.64135 4.694261 Chordata 7711 Chordata Chordata 180 3.9199999999999985e-55   NR EMP40612.1 8469 g7595 i0 97.9 50.2867132867133 94 2 98.6 0 3 284 51 144 EMP40612.1 40S ribosomal protein S9 [Chelonia mydas] diamond 14382 180 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
29158436 29158436 PRJNA263496_P_NODE_5429_length_356_cov_1.765472_g5176_i0 PRJNA263496 5429 356 1.765472 6.28508032 Pelobates cultripes 61616 Chordata Chordata 90.5 4.36e-19   NR CAH2274948.1 61616 g5176 i0 97.8 3.48876404494382 46 1 38.8 0 354 217 244 289 CAH2274948.1 phosphoglycerate mutase 2 [Pelobates cultripes] diamond 1242 90.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
29207726 29207726 PRJNA263496_P_NODE_6709_length_315_cov_1.424812_g6456_i0 PRJNA263496 6709 315 1.424812 4.4881578 Opisthokonta 33154 Chordata Chordata 160 8.859999999999999e-48   NR XP_043531236.1 36176 g6456 i0 70.2 189.171428571429 104 31 99 0 314 3 24 127 XP_043531236.1 ADP-ribosylation factor 2-like [Chiloscyllium plagiosum] diamond 59589 161 0.993788819875776 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
29316103 29316103 PRJNA263496_P_NODE_20389_length_170_cov_1.619835_g20136_i0 PRJNA263496 20389 170 1.619835 2.7537195 Pleurodeles waltl 8319 Chordata Chordata 83.6 5.24e-17   NR XP_069079511.1 8319 g20136 i0 67.9 1.94117647058824 56 18 98.8 0 168 1 147 202 XP_069079511.1 antizyme inhibitor 2-like isoform X3 [Pleurodeles waltl] diamond 330 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
29744048 29744048 PRJNA263496_P_NODE_12790_length_219_cov_1.200000_g12537_i0 PRJNA263496 12790 219 1.2 2.628 Opisthokonta 33154 Chordata Chordata 99.8 6.139999999999999e-24   NR CAH1269811.1 7740 g12537 i0 68.5 6 73 22 98.6 1 218 3 106 178 CAH1269811.1 APRT [Branchiostoma lanceolatum] diamond 1314 100 0.998 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29852968 29852968 PRJNA263496_P_NODE_9431_length_257_cov_2.173077_g9178_i0 PRJNA263496 9431 257 2.173077 5.58480789 Heptranchias perlo 212740 Chordata Chordata 75.9 3.79e-14   NR XP_067824173.1 212740 g9178 i0 51.3 2.73151750972763 78 37 89.9 1 232 2 24 101 XP_067824173.1 procathepsin L-like isoform X2 [Heptranchias perlo] diamond 702 75.9 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
29916249 29916249 PRJNA263496_P_NODE_23291_length_164_cov_0.886957_g23038_i0 PRJNA263496 23291 164 0.886957 1.45460948 Petaurus breviceps papuanus 3040969 Chordata Chordata 61.2 3.76e-9   NR XP_068927669.1 3040969 g23038 i0 76.5 4.97560975609756 34 8 62.2 0 2 103 406 439 XP_068927669.1 LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Petaurus breviceps papuanus] diamond 816 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Petauridae Petaurus Petaurus breviceps
29933977 29933977 PRJNA263496_P_NODE_12671_length_220_cov_1.192982_g12418_i0 PRJNA263496 12671 220 1.192982 2.6245604 Chordata 7711 Chordata Chordata 141 5.47e-39   NR KAJ1128736.1 8319 g12418 i0 100 159.272727272727 73 0 99.5 0 219 1 197 269 KAJ1128736.1 hypothetical protein NDU88_007111 [Pleurodeles waltl] diamond 35040 141 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30073881 30073881 PRJNA263496_P_NODE_19572_length_174_cov_2.784000_g19319_i0 PRJNA263496 19572 174 2.784 4.84416 Polypterus senegalus 55291 Chordata Chordata 85.1 1.77e-17   NR KAG2461721.1 55291 g19319 i0 72.4 4.48275862068965 58 16 100 0 1 174 195 252 KAG2461721.1 EYA2 protein, partial [Polypterus senegalus] diamond 780 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30295609 30295609 PRJNA263496_P_NODE_11612_length_230_cov_1.127072_g11359_i0 PRJNA263496 11612 230 1.127072 2.5922656 Staurois parvus 386267 Chordata Chordata 65.5 2.55e-12   NR CAI9560044.1 386267 g11359 i0 74.4 0.508695652173913 39 10 50.9 0 228 112 3 41 CAI9560044.1 unnamed protein product [Staurois parvus] diamond 117 65.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30628662 30628662 PRJNA263496_P_NODE_12853_length_218_cov_1.923077_g12600_i0 PRJNA263496 12853 218 1.923077 4.19230786 Metazoa 33208 Chordata Chordata 44.7 0.00336   NR XP_067980492.1 7769 g12600 i0 39.1 1.81651376146789 64 37 88.1 2 17 208 29 90 XP_067980492.1 translationally-controlled tumor protein [Myxine glutinosa] diamond 396 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
30976574 30976574 PRJNA263496_P_NODE_11214_length_234_cov_1.654054_g10961_i0 PRJNA263496 11214 234 1.654054 3.87048636 Metazoa 33208 Chordata Chordata 73.9 1.29e-13   NR XP_067854053.1 212740 g10961 i0 42.3 5 78 44 98.7 1 233 3 36 113 XP_067854053.1 pleckstrin homology domain-containing family F member 1 isoform X2 [Heptranchias perlo] diamond 1170 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
31071358 31071358 PRJNA263496_P_NODE_15775_length_196_cov_9.612245_g15522_i0 PRJNA263496 15775 196 9.612245 18.8400002 Chordata 7711 Chordata Chordata 49.7 2.95e-6   NR XP_067885022.1 7792 g15522 i0 56.8 2.41836734693878 37 16 56.6 0 165 55 3 39 XP_067885022.1 thymosin beta-10-like [Heterodontus francisci] diamond 474 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
31355863 31355863 PRJNA263496_P_NODE_6156_length_331_cov_2.758865_g5903_i0 PRJNA263496 6156 331 2.758865 9.13184315 Rodentia 9989 Chordata Chordata 43.5 0.0481   NR KAL1771547.1 42415 g5903 i0 61.8 0.960725075528701 34 13 30.8 0 330 229 257 290 KAL1771547.1 ADP/ATP translocase 2 [Sigmodon hispidus] diamond 318 43.9 0.990888382687927 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Sigmodon Sigmodon hispidus
31369848 31369848 PRJNA263496_P_NODE_17656_length_185_cov_1.492647_g17403_i0 PRJNA263496 17656 185 1.492647 2.76139695 Echinops telfairi 9371 Chordata Chordata 53.9 7.35e-7   NR XP_004716931.2 9371 g17403 i0 50 2.95135135135135 60 30 97.3 0 180 1 66 125 XP_004716931.2 ATP synthase F(0) complex subunit C2, mitochondrial isoform X1 [Echinops telfairi] diamond 546 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
31401449 31401449 PRJNA263496_P_NODE_22216_length_166_cov_0.863248_g21963_i0 PRJNA263496 22216 166 0.863248 1.43299168 Latimeria chalumnae 7897 Chordata Chordata 67.4 1.01e-12   NR XP_005987634.1 7897 g21963 i0 60 4.96987951807229 55 22 99.4 0 165 1 9 63 XP_005987634.1 60S acidic ribosomal protein P2 [Latimeria chalumnae] diamond 825 67.4 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
31861654 31861654 PRJNA263496_P_NODE_11057_length_236_cov_1.631016_g10804_i0 PRJNA263496 11057 236 1.631016 3.84919776 Chordata 7711 Chordata Chordata 155 6.969999999999999e-46   NR KFP02737.1 9244 g10804 i0 97.4 49.271186440678 76 2 96.6 0 9 236 108 183 KFP02737.1 Ribosome biogenesis protein NSA2, partial [Calypte anna] diamond 11628 156 0.993589743589744 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Trochilidae Calypte Calypte anna
32823685 32823685 PRJNA263496_P_NODE_18700_length_179_cov_1.884615_g18447_i0 PRJNA263496 18700 179 1.884615 3.37346085 Engystomops pustulosus 76066 Chordata Chordata 52.4 6.32e-6   NR KAG8571490.1 76066 g18447 i0 57.7 4.35754189944134 52 22 87.2 0 6 161 1020 1071 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 780 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;