RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA263496 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28747778 28747778 PRJNA263496_P_NODE_22727_length_165_cov_0.879310_g22474_i0 PRJNA263496 22727 165 0.87931 1.4508615 Cymbomonas tetramitiformis 36881 Plants Plants 42.4 0.0176   NR KAK3275179.1 36881 g22474 i0 34.7 2.74545454545455 49 31 89.1 1 18 164 215 262 KAK3275179.1 hypothetical protein CYMTET_16678 [Cymbomonas tetramitiformis] diamond 453 42.4 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
29491661 29491661 PRJNA263496_P_NODE_22010_length_166_cov_0.871795_g21757_i0 PRJNA263496 22010 166 0.871795 1.4471797 Eukaryota 2759 Plants Plants 48.5 2.72e-5   NR KAK2076728.1 3111 g21757 i0 100 85.0481927710843 21 0 38 0 6 68 99 119 KAK2076728.1 Thioredoxin-like protein yls8 [Prototheca wickerhamii] diamond 14118 48.9 0.991820040899796 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
31829967 31829967 PRJNA263496_P_NODE_10537_length_243_cov_1.283505_g10284_i0 PRJNA263496 10537 243 1.283505 3.11891715 Chlamydomonas 3052 Plants Plants 46.6 0.00164   NR XP_042923264.1 3055 g10284 i0 40.4 1.40740740740741 57 32 70.4 1 239 69 566 620 XP_042923264.1 uncharacterized protein CHLRE_07g358001v5 [Chlamydomonas reinhardtii] diamond 342 46.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;