RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA263496 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31735130 31735130 PRJNA263496_P_NODE_23877_length_163_cov_0.894737_g23624_i0 PRJNA263496 23877 163 0.894737 1.45842131 Pseudomonadati 3379134 Bacteria Bacteria 48.5 1.1e-4   NR OQC30642.1 1852927 g23624 i0 53.3 1.74846625766871 45 20 82.8 1 27 161 299 342 OQC30642.1 MAG: Alcohol dehydrogenase YqhD [Verrucomicrobia bacterium ADurb.Bin070] diamond 285 48.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium ADurb.Bin070
32097134 32097134 PRJNA263496_P_NODE_19138_length_177_cov_1.203125_g18885_i0 PRJNA263496 19138 177 1.203125 2.12953125 Planctomycetales bacterium 2053591 Bacteria Bacteria 39.7 0.0351   NR NIL97050.1 2053591 g18885 i0 40.4 0.966101694915254 57 24 84.7 3 22 171 10 63 NIL97050.1 lipoate--protein ligase family protein [Planctomycetales bacterium] diamond 171 39.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium
32318981 32318981 PRJNA263496_P_NODE_8539_length_272_cov_1.309417_g8286_i0 PRJNA263496 8539 272 1.309417 3.56161424 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0268   NR MEI6341235.1 2026799 g8286 i0 36 0.827205882352941 75 39 72.8 2 54 251 84 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 225 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32526601 32526601 PRJNA263496_P_NODE_4299_length_411_cov_3.099448_g4046_i0 PRJNA263496 4299 411 3.099448 12.73873128 Bacteria 2 Bacteria Bacteria 91.3 6.890000000000001e-21   NR MFM1941955.1 2026799 g4046 i0 54.2 5.55474452554745 83 38 60.6 0 23 271 3 85 MFM1941955.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 2283 92 0.992391304347826 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;