RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA263496 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28337341 28337341 PRJNA263496_P_NODE_23866_length_163_cov_0.894737_g23613_i0 PRJNA263496 23866 163 0.894737 1.45842131 Stygiella incarcerata 1712417 Root_unresolved Root_unresolved 92.8 9.4e-22   NR ANM86184.1 1712417 g23613 i0 79.6 17.8343558282209 54 11 99.4 0 162 1 5 58 ANM86184.1 60S ribosomal protein L15-2 [Stygiella incarcerata] diamond 2907 92.8 1 Eukaryota Discoba       Jakobida Stygiellidae Stygiella Stygiella incarcerata
28400477 28400477 PRJNA263496_P_NODE_18626_length_180_cov_1.167939_g18373_i0 PRJNA263496 18626 180 1.167939 2.1022902 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 55.1 2.6e-7   NR EPY22881.1 28005 g18373 i0 61.4 2.33333333333333 44 17 73.3 0 132 1 126 169 EPY22881.1 nascent polypeptide-associated complex subunit alpha [Strigomonas culicis] diamond 420 55.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
29284337 29284337 PRJNA263496_P_NODE_18109_length_183_cov_1.104478_g17856_i0 PRJNA263496 18109 183 1.104478 2.02119474 Stygiella incarcerata 1712417 Root_unresolved Root_unresolved 89 8.6e-19   NR ANM86867.1 1712417 g17856 i0 70 5.9016393442623 60 18 98.4 0 3 182 1000 1059 ANM86867.1 pyruvate NADP oxidoreductase [Stygiella incarcerata] diamond 1080 89 1 Eukaryota Discoba       Jakobida Stygiellidae Stygiella Stygiella incarcerata
29428316 29428316 PRJNA263496_P_NODE_24689_length_162_cov_0.902655_g24436_i0 PRJNA263496 24689 162 0.902655 1.4623011 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.1 0.00906   NR XP_002673592.1 5762 g24436 i0 43.4 6.07407407407407 53 30 98.1 0 3 161 58 110 XP_002673592.1 uncharacterized protein NAEGRDRAFT_71175 [Naegleria gruberi] diamond 984 43.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31970577 31970577 PRJNA263496_P_NODE_19538_length_175_cov_1.007937_g19285_i0 PRJNA263496 19538 175 1.007937 1.76388975 Trypanosoma rangeli SC58 429131 Euglenozoa other_Eukaryota 41.6 0.0313   NR ESL05026.1 429131 g19285 i0 68 0.428571428571429 25 8 42.9 0 83 157 43 67 ESL05026.1 hypothetical protein TRSC58_07379 [Trypanosoma rangeli SC58] diamond 75 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;