RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA263496" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA263496 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9297365 9297365 PRJNA263496_P_NODE_21008_length_167_cov_1.296610_g20755_i0 PRJNA263496 21008 167 1.29661 2.1653387 root 1 Root_unresolved Root_unresolved 95.1 4.72e-21   NR AAN33185.1 108607 g20755 i0 87.3 31.6167664670659 55 7 98.8 0 165 1 109 163 AAN33185.1 putative pyruvate phosphate dikinase [Mastigamoeba balamuthi] diamond 5280 95.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
29284340 29284340 PRJNA263496_P_NODE_22909_length_165_cov_0.879310_g22656_i0 PRJNA263496 22909 165 0.87931 1.4508615 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 114 1.67e-28   NR PRP87642.1 1890364 g22656 i0 100 0.981818181818182 54 0 98.2 0 163 2 308 361 PRP87642.1 lysosomal protective protein-like [Planoprotostelium fungivorum] diamond 162 114 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29284341 29284341 PRJNA263496_P_NODE_24329_length_163_cov_0.894737_g24076_i0 PRJNA263496 24329 163 0.894737 1.45842131 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 69.7 3.26e-12   NR KAH3745561.1 1580589 g24076 i0 62.3 1.95092024539877 53 20 97.5 0 161 3 45 97 KAH3745561.1 NAD-dependent epimerase/dehydratase family protein [Pelomyxa schiedti] diamond 318 69.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;