RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA255848" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA255848 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29933974 29933974 PRJNA255848_P_NODE_43151_length_163_cov_0.894737_g42833_i0 PRJNA255848 43151 163 0.894737 1.45842131 Metazoa 33208 Porifera other_Eukaryota 113 5.200000000000001e-28   NR AZI95704.1 6063 g42833 i0 98.1 160.98773006135 54 1 99.4 0 2 163 165 218 AZI95704.1 26S proteasome regulatory subunit 6B, partial [Halichondria panicea] diamond 26241 114 0.991228070175439 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
29965469 29965469 PRJNA255848_P_NODE_31811_length_176_cov_1.543307_g31493_i0 PRJNA255848 31811 176 1.543307 2.71622032 Metazoa 33208 Porifera other_Eukaryota 123 9.04e-32   NR XP_064387249.1 6063 g31493 i0 98.3 183.869318181818 58 1 98.9 0 1 174 138 195 XP_064387249.1 histone deacetylase 3-like [Halichondria panicea] diamond 32361 124 0.991935483870968 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
31165702 31165702 PRJNA255848_P_NODE_26295_length_194_cov_1.406897_g25977_i0 PRJNA255848 26295 194 1.406897 2.72938018 Metazoa 33208 Porifera other_Eukaryota 124 5.049999999999999e-31   NR AZI95706.1 6063 g25977 i0 98.4 230.551546391753 64 1 99 0 2 193 278 341 AZI95706.1 valosin containing protein, partial [Halichondria panicea] diamond 44727 125 0.992 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;