RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA255848" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA255848 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26757356 26757356 PRJNA255848_P_NODE_37221_length_166_cov_0.871795_g36903_i0 PRJNA255848 37221 166 0.871795 1.4471797 Deinococcales bacterium 2478479 Bacteria Bacteria 48.5 1.2e-4   NR MFN3265858.1 2478479 g36903 i0 45.3 0.957831325301205 53 28 94 1 11 166 178 230 MFN3265858.1 galactokinase [Deinococcales bacterium] diamond 159 48.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales     Deinococcales bacterium
29947704 29947704 PRJNA255848_P_NODE_47551_length_161_cov_0.910714_g47233_i0 PRJNA255848 47551 161 0.910714 1.46624954 Fervidobacterium sp. 1871331 Bacteria Bacteria 53.9 1.38e-6   NR HUM43468.1 1871331 g47233 i0 49 1.82608695652174 49 25 91.3 0 11 157 294 342 HUM43468.1 hypothetical protein [Fervidobacterium sp.] diamond 294 53.9 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
31608775 31608775 PRJNA255848_P_NODE_41676_length_164_cov_0.886957_g41358_i0 PRJNA255848 41676 164 0.886957 1.45460948 Calidithermus 2747271 Bacteria Bacteria 70.5 3.26e-13   NR WP_119280117.1 1644118 g41358 i0 57.7 1.9390243902439 52 22 95.1 0 2 157 116 167 WP_119280117.1 Uma2 family endonuclease [Calidithermus roseus] diamond 318 70.9 0.994358251057828 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Calidithermus Calidithermus roseus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;