RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA255848" and tax_kingdom = "Thermoproteati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 2 ✖

bioproject 1

  • PRJNA255848 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28084629 28084629 PRJNA255848_P_NODE_38165_length_166_cov_0.871795_g37847_i0 PRJNA255848 38165 166 0.871795 1.4471797 Sulfolobaceae archaeon 2967306 Archaea Archaea 59.7 1.24e-8   NR MEM0174246.1 2967306 g37847 i0 53.7 0.975903614457831 54 25 97.6 0 1 162 74 127 MEM0174246.1 helix-turn-helix domain-containing protein [Sulfolobaceae archaeon] diamond 162 59.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae   Sulfolobaceae archaeon
31179524 31179524 PRJNA255848_P_NODE_7915_length_378_cov_3.580547_g7597_i0 PRJNA255848 7915 378 3.580547 13.53446766 Thermofilum sp. 1961369 Archaea Archaea 44.3 0.0464   NR MCC5998535.1 1961369 g7597 i0 36.6 0.738095238095238 93 52 68.3 2 113 370 131 223 MCC5998535.1 hypothetical protein [Thermofilum sp.] diamond 279 44.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;