RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA255848" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA255848 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29252702 29252702 PRJNA255848_P_NODE_45249_length_162_cov_0.902655_g44931_i0 PRJNA255848 45249 162 0.902655 1.4623011 Acrasis kona 1008807 Heterolobosea other_Eukaryota 68.2 3.55e-12   NR KAL0484198.1 1008807 g44931 i0 62.3 1.96296296296296 53 20 98.1 0 160 2 129 181 KAL0484198.1 ribosomal protein L10 [Acrasis kona] diamond 318 68.2 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29473697 29473697 PRJNA255848_P_NODE_43370_length_163_cov_0.894737_g43052_i0 PRJNA255848 43370 163 0.894737 1.45842131 Bodo saltans 75058 Euglenozoa other_Eukaryota 82.8 5.32e-18   NR CUI14406.1 75058 g43052 i0 72.2 4.96932515337423 54 15 99.4 0 162 1 61 114 CUI14406.1 60S ribosomal protein L9, putative [Bodo saltans] diamond 810 82.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;