RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA235310" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA235310 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29252679 29252679 PRJNA235310_P_NODE_4409_length_177_cov_1.609375_g4383_i0 PRJNA235310 4409 177 1.609375 2.84859375 Syntrophus sp. (in: bacteria) 48412 Bacteria Bacteria 54.7 9.05e-7   NR WP_367360148.1 48412 g4383 i0 45.5 0.932203389830508 55 29 93.2 1 169 5 138 191 WP_367360148.1 hypothetical protein [Syntrophus sp. (in: bacteria)] diamond 165 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. (in: bacteria)
32746843 32746843 PRJNA235310_P_NODE_2500_length_244_cov_1.333333_g2474_i0 PRJNA235310 2500 244 1.333333 3.25333252 Pseudomonadati 3379134 Bacteria Bacteria 104 6.5899999999999986e-24   NR MDY6843897.1 2202153 g2474 i0 62.2 12.6516393442623 74 28 91 0 1 222 467 540 MDY6843897.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Thermodesulfobacteriota bacterium] diamond 3087 105 0.990476190476191 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;