RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA235310" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA235310 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367384 367384 PRJNA235310_P_NODE_541_length_519_cov_6.912766_g517_i0 PRJNA235310 541 519 6.912766 35.87725554 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 139 1.32e-38   NR CAB3265748.1 59560 g517 i0 49 10.3352601156069 143 63 82.7 1 33 461 5 137 CAB3265748.1 40S ribosomal protein S12-like [Phallusia mammillata] diamond 5364 139 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
2918001 2918001 PRJNA235310_P_NODE_5123_length_168_cov_0.873950_g5097_i0 PRJNA235310 5123 168 0.87395 1.468236 Petaurus breviceps papuanus 3040969 Chordata Chordata 83.2 3.72e-17   NR XP_068943861.1 3040969 g5097 i0 67.3 6.875 55 18 98.2 0 165 1 161 215 XP_068943861.1 procathepsin L-like [Petaurus breviceps papuanus] diamond 1155 83.6 0.995215311004785 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Petauridae Petaurus Petaurus breviceps
6745080 6745080 PRJNA235310_P_NODE_886_length_422_cov_1.627346_g860_i0 PRJNA235310 886 422 1.627346 6.86740012 Oikopleura dioica 34765 Chordata Chordata 117 1.38e-30   NR CAG5105686.1 34765 g860 i0 52 1.39336492890995 98 47 69.7 0 87 380 12 109 CAG5105686.1 Oidioi.mRNA.OKI2018_I69.chr1.g2360.t1.cds [Oikopleura dioica] diamond 588 117 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
12535241 12535241 PRJNA235310_P_NODE_6390_length_162_cov_0.920354_g6364_i0 PRJNA235310 6390 162 0.920354 1.49097348 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72 5.98e-13   NR NP_001279969.1 7868 g6364 i0 60.8 6.25925925925926 51 20 94.4 0 153 1 7 57 NP_001279969.1 T-complex protein 1 subunit theta [Callorhinchus milii] diamond 1014 72 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
26694076 26694076 PRJNA235310_P_NODE_6121_length_163_cov_0.912281_g6095_i0 PRJNA235310 6121 163 0.912281 1.48701803 Styela clava 7725 Chordata Chordata 55.1 3.36e-7   NR XP_039261475.1 7725 g6095 i0 50.9 2.09815950920245 53 26 97.5 0 1 159 15 67 XP_039261475.1 glutathione S-transferase 2-like [Styela clava] diamond 342 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27534132 27534132 PRJNA235310_P_NODE_743_length_456_cov_14.238329_g717_i0 PRJNA235310 743 456 14.238329 64.92678024 Opisthokonta 33154 Chordata Chordata 168 9.13e-51   NR XP_035667477.1 7739 g717 i0 69.5 40.0460526315789 118 36 77.6 0 20 373 1 118 XP_035667477.1 40S ribosomal protein S17 [Branchiostoma floridae] diamond 18261 168 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28923247 28923247 PRJNA235310_P_NODE_2048_length_274_cov_1.777778_g2022_i0 PRJNA235310 2048 274 1.777778 4.87111172 Metazoa 33208 Chordata Chordata 97.1 2.1699999999999998e-23   NR XP_070727999.1 55135 g2022 i0 55.4 12.470802919708 92 39 98.5 1 3 272 30 121 XP_070727999.1 histone H2B-like [Pristiophorus japonicus] diamond 3417 97.8 0.992842535787321 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes   Pristiophoridae Pristiophorus Pristiophorus japonicus
29063612 29063612 PRJNA235310_P_NODE_5628_length_166_cov_0.888889_g5602_i0 PRJNA235310 5628 166 0.888889 1.47555574 Ranitomeya imitator 111125 Chordata Chordata 42 0.0245   NR CAJ0956274.1 111125 g5602 i0 56.7 1.10240963855422 30 13 54.2 0 76 165 1 30 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 183 42.4 0.990566037735849 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29239206 29239206 PRJNA235310_P_NODE_2769_length_229_cov_1.666667_g2743_i0 PRJNA235310 2769 229 1.666667 3.81666743 Chondrichthyes 7777 Chordata Chordata 69.3 1.29e-11   NR XP_007895161.1 7868 g2743 i0 47.4 9.13100436681223 78 37 96.9 2 227 6 555 632 XP_007895161.1 neutral ceramidase [Callorhinchus milii] diamond 2091 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
29649190 29649190 PRJNA235310_P_NODE_2130_length_268_cov_1.671233_g2104_i0 PRJNA235310 2130 268 1.671233 4.47890444 root 1 Root_unresolved Root_unresolved 74.7 1.21e-14   NR CAH1273121.1 7740 g2104 i0 49.3 5.31716417910448 69 35 77.2 0 3 209 78 146 CAH1273121.1 MGST1 [Branchiostoma lanceolatum] diamond 1425 74.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29680821 29680821 PRJNA235310_P_NODE_4830_length_169_cov_1.150000_g4804_i0 PRJNA235310 4830 169 1.15 1.9435 Opisthokonta 33154 Chordata Chordata 84.7 3.18e-18   NR XP_035682653.1 7739 g4804 i0 72.7 18.5502958579882 55 15 97.6 0 167 3 143 197 XP_035682653.1 V-type proton ATPase subunit D-like [Branchiostoma floridae] diamond 3135 84.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30105475 30105475 PRJNA235310_P_NODE_2972_length_221_cov_1.127907_g2946_i0 PRJNA235310 2972 221 1.127907 2.49267447 Rhincodon typus 259920 Chordata Chordata 57.8 1.4e-7   NR XP_048461938.1 259920 g2946 i0 40 1.95475113122172 70 40 92.3 1 219 16 554 623 XP_048461938.1 vacuolar protein sorting-associated protein 35 [Rhincodon typus] diamond 432 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Rhincodontidae Rhincodon Rhincodon typus
30674198 30674198 PRJNA235310_P_NODE_1733_length_305_cov_1.015625_g1707_i0 PRJNA235310 1733 305 1.015625 3.09765625 Branchiostoma belcheri 7741 Chordata Chordata 94.7 3.94e-20   NR XP_019616203.1 7741 g1707 i0 50 2.84262295081967 96 46 93.4 2 296 12 31 125 XP_019616203.1 PREDICTED: cAMP-regulated D2 protein-like [Branchiostoma belcheri] diamond 867 94.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31496296 31496296 PRJNA235310_P_NODE_4956_length_169_cov_0.866667_g4930_i0 PRJNA235310 4956 169 0.866667 1.46466723 Branchiostoma floridae 7739 Chordata Chordata 43.9 0.0052   NR XP_035697787.1 7739 g4930 i0 40.5 1.24260355029586 37 22 65.7 0 55 165 12 48 XP_035697787.1 EEF1A lysine methyltransferase 4-like [Branchiostoma floridae] diamond 210 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31735119 31735119 PRJNA235310_P_NODE_1117_length_379_cov_1.839394_g1091_i0 PRJNA235310 1117 379 1.839394 6.97130326 Chordata 7711 Chordata Chordata 119 1.71e-28   NR XP_064412939.1 7897 g1091 i0 58.8 44.5250659630607 97 39 76 1 291 4 382 478 XP_064412939.1 cytochrome b-245 heavy chain [Latimeria chalumnae] diamond 16875 119 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
32002240 32002240 PRJNA235310_P_NODE_558_length_513_cov_2.209052_g534_i0 PRJNA235310 558 513 2.209052 11.33243676 Callorhinchus milii 7868 Chordata Chordata 78.2 1.99e-13   NR XP_007905810.2 7868 g534 i0 40 2.66666666666667 115 61 66.1 3 511 173 278 386 XP_007905810.2 retinol dehydrogenase 12 isoform X1 [Callorhinchus milii] diamond 1368 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
32368291 32368291 PRJNA235310_P_NODE_5459_length_166_cov_1.085470_g5433_i0 PRJNA235310 5459 166 1.08547 1.8018802 Metazoa 33208 Chordata Chordata 72 6.280000000000002e-13   NR XP_008118474.2 28377 g5433 i0 61.8 92.4397590361446 55 21 99.4 0 165 1 972 1026 XP_008118474.2 eukaryotic translation initiation factor 5B [Anolis carolinensis] diamond 15345 72 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
32508737 32508737 PRJNA235310_P_NODE_4699_length_171_cov_1.278689_g4673_i0 PRJNA235310 4699 171 1.278689 2.18655819 Fukomys damarensis 885580 Chordata Chordata 52.4 5.54e-6   NR KFO21940.1 885580 g4673 i0 43.9 5 57 30 96.5 2 170 6 592 648 KFO21940.1 Rho GTPase-activating protein 29 [Fukomys damarensis] diamond 855 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
32540346 32540346 PRJNA235310_P_NODE_2879_length_225_cov_0.886364_g2853_i0 PRJNA235310 2879 225 0.886364 1.994319 Ranitomeya imitator 111125 Chordata Chordata 43.5 0.0155   NR CAJ0953929.1 111125 g2853 i0 35.2 3.66666666666667 54 35 72 0 163 2 59 112 CAJ0953929.1 unnamed protein product [Ranitomeya imitator] diamond 825 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;