RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA235310" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA235310 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28526941 28526941 PRJNA235310_P_NODE_6487_length_154_cov_3.742857_g6461_i0 PRJNA235310 6487 154 3.742857 5.76399978 Synergistaceae bacterium 2053624 Bacteria Bacteria 47.4 1.55e-4   NR MDR2137471.1 2053624 g6461 i0 48.1 1.01298701298701 52 20 87.7 2 2 136 26 77 MDR2137471.1 TerD family protein [Synergistaceae bacterium] diamond 156 47.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30990412 30990412 PRJNA235310_P_NODE_3254_length_210_cov_1.496894_g3228_i0 PRJNA235310 3254 210 1.496894 3.1434774 Synergistaceae bacterium 2053624 Bacteria Bacteria 52 5.76e-6   NR MDR2137471.1 2053624 g3228 i0 50 3.18571428571429 54 19 65.7 2 208 71 24 77 MDR2137471.1 TerD family protein [Synergistaceae bacterium] diamond 669 52 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31907286 31907286 PRJNA235310_P_NODE_6157_length_163_cov_0.912281_g6131_i0 PRJNA235310 6157 163 0.912281 1.48701803 Deinococcus aquaticus 328692 Bacteria Bacteria 94 9.57e-21   NR WP_273991361.1 328692 g6131 i0 91.8 0.901840490797546 49 4 90.2 0 148 2 1 49 WP_273991361.1 hypothetical protein [Deinococcus aquaticus] diamond 147 94 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aquaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;