RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA235310" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA235310 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27358641 27358641 PRJNA235310_P_NODE_103_length_890_cov_2.368609_g87_i0 PRJNA235310 103 890 2.368609 21.0806201 Candidatus Binatus sp. 2811406 Bacteria Bacteria 53.9 4.18e-4   NR HYR96151.1 2811406 g87 i0 35.5 0.475280898876405 141 77 45.2 6 806 405 104 237 HYR96151.1 hypothetical protein [Candidatus Binatus sp.] diamond 423 53.9 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales Candidatus Binataceae Candidatus Binatus Candidatus Binatus sp.
28432068 28432068 PRJNA235310_P_NODE_4546_length_175_cov_1.079365_g4520_i0 PRJNA235310 4546 175 1.079365 1.88888875 Patescibacteria group bacterium 2052139 Bacteria Bacteria 47.8 1.53e-4   NR MCH8821418.1 2052139 g4520 i0 45.5 3.84 55 25 94.3 1 10 174 27 76 MCH8821418.1 NAD(P)H-dependent oxidoreductase [Patescibacteria group bacterium] diamond 672 47.8 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
28558464 28558464 PRJNA235310_P_NODE_5047_length_168_cov_1.050420_g5021_i0 PRJNA235310 5047 168 1.05042 1.7647056 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 76.3 1.06e-14   NR MBI3336722.1 2030811 g5021 i0 68.5 0.964285714285714 54 17 96.4 0 162 1 47 100 MBI3336722.1 uridine phosphorylase [Candidatus Peregrinibacteria bacterium] diamond 162 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
30327269 30327269 PRJNA235310_P_NODE_1052_length_390_cov_2.988270_g1026_i0 PRJNA235310 1052 390 2.98827 11.654253 Candidatus Sumerlaeaceae bacterium 2315423 Bacteria Bacteria 124 2.43e-31   NR MBX7246701.1 2315423 g1026 i0 56 9.43076923076923 100 42 76.9 1 74 373 2 99 MBX7246701.1 NAD(P)-dependent alcohol dehydrogenase [Candidatus Sumerlaeaceae bacterium] diamond 3678 124 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia Candidatus Sumerlaeales Candidatus Sumerlaeaceae   Candidatus Sumerlaeaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;