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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA229468" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 7 ✖

bioproject 1

  • PRJNA229468 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22043871 22043871 PRJNA229468_S_NODE_618_length_206_cov_1.222930_g605_i0 PRJNA229468 618 206 1.22293 2.5192358 Candidatus Nitrosopolaris 2959592 Archaea Archaea 108 3.4300000000000005e-27   NR HET6800875.1 2169593 g605 i0 72.1 14.752427184466 68 19 99 0 1 204 6 73 HET6800875.1 glucose 1-dehydrogenase [Nitrososphaeraceae archaeon] diamond 3039 109 0.990825688073395 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
27200213 27200213 PRJNA229468_S_NODE_802_length_185_cov_1.500000_g789_i0 PRJNA229468 802 185 1.5 2.775 archaeon 1906665 Archaea Archaea 57.4 3.82e-8   NR MDP2435541.1 1906665 g789 i0 61 0.664864864864865 41 15 66.5 1 125 3 10 49 MDP2435541.1 lipocalin family protein [archaeon] diamond 123 57.4 1 Archaea               archaeon
28116162 28116162 PRJNA229468_S_NODE_85_length_522_cov_3.750529_g74_i0 PRJNA229468 85 522 3.750529 19.57776138 archaeon 1906665 Archaea Archaea 191 1.5799999999999998e-58   NR RYH12636.1 1906665 g74 i0 59.4 0.948275862068966 165 65 94.8 2 496 2 1 163 RYH12636.1 MAG: glutathione transferase GstA [archaeon] diamond 495 191 1 Archaea               archaeon
28147983 28147983 PRJNA229468_S_NODE_545_length_215_cov_2.150602_g532_i0 PRJNA229468 545 215 2.150602 4.6237943 archaeon 1906665 Archaea Archaea 89.7 5.56e-20   NR MCQ2818700.1 1906665 g532 i0 71.9 0.795348837209302 57 16 79.5 0 3 173 146 202 MCQ2818700.1 30S ribosomal protein S3 [archaeon] diamond 171 89.7 1 Archaea               archaeon
28937291 28937291 PRJNA229468_S_NODE_508_length_222_cov_1.751445_g495_i0 PRJNA229468 508 222 1.751445 3.8882079 archaeon 1906665 Archaea Archaea 52.4 3.23e-6   NR MDP2436403.1 1906665 g495 i0 40.9 0.891891891891892 66 36 89.2 1 23 220 6 68 MDP2436403.1 hypothetical protein [archaeon] diamond 198 52.4 1 Archaea               archaeon
30547884 30547884 PRJNA229468_S_NODE_173_length_362_cov_1.146965_g160_i0 PRJNA229468 173 362 1.146965 4.1520133 archaeon 1906665 Archaea Archaea 105 5.59e-26   NR MDP2435541.1 1906665 g160 i0 51.8 0.92817679558011 112 50 89.5 3 358 35 65 176 MDP2435541.1 lipocalin family protein [archaeon] diamond 336 105 1 Archaea               archaeon
30547885 30547885 PRJNA229468_S_NODE_453_length_233_cov_1.940217_g440_i0 PRJNA229468 453 233 1.940217 4.52070561 Methanobacteriota archaeon 2026739 Archaea Archaea 49.3 1.33e-4   NR MAR93509.1 2026739 g440 i0 41.9 6.30901287553648 62 31 79.8 1 228 43 150 206 MAR93509.1 hypothetical protein [Methanobacteriota archaeon] diamond 1470 49.3 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;