RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA229468" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA229468 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17634185 17634185 PRJNA229468_S_NODE_434_length_238_cov_1.068783_g421_i0 PRJNA229468 434 238 1.068783 2.54370354 root 1 Root_unresolved Root_unresolved 125 4.95e-35   NR MBO8831362.1 1280 g421 i0 69.6 91.6008403361345 79 24 99.6 0 238 2 22 100 MBO8831362.1 30S ribosomal protein S5 [Staphylococcus aureus] diamond 21801 125 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
27453407 27453407 PRJNA229468_S_NODE_123_length_445_cov_1.373737_g110_i0 PRJNA229468 123 445 1.373737 6.11312965 Fructilactobacillus sanfranciscensis 1625 Bacteria Bacteria 89.7 8.58e-20   NR POH17992.1 1625 g110 i0 67.1 0.492134831460674 73 24 49.2 0 1 219 59 131 POH17992.1 hypothetical protein BGL45_06810 [Fructilactobacillus sanfranciscensis] diamond 219 89.7 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus sanfranciscensis
31843895 31843895 PRJNA229468_S_NODE_397_length_250_cov_1.074627_g384_i0 PRJNA229468 397 250 1.074627 2.6865675 Fructilactobacillus sanfranciscensis 1625 Bacteria Bacteria 92.8 4.900000000000001e-22   NR POH17992.1 1625 g384 i0 68.8 0.924 77 24 92.4 0 236 6 28 104 POH17992.1 hypothetical protein BGL45_06810 [Fructilactobacillus sanfranciscensis] diamond 231 92.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Fructilactobacillus Fructilactobacillus sanfranciscensis
32146593 32146593 PRJNA229468_S_NODE_458_length_232_cov_0.956284_g445_i0 PRJNA229468 458 232 0.956284 2.21857888 Bacteria 2 Bacteria Bacteria 116 4.8399999999999994e-30   NR WP_308153850.1 1423 g445 i0 71.4 13.8879310344828 77 22 99.6 0 231 1 2 78 WP_308153850.1 glucose 1-dehydrogenase [Bacillus subtilis] diamond 3222 117 0.991452991452991 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;