RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA229468" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA229468 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27358639 27358639 PRJNA229468_S_NODE_423_length_241_cov_1.088542_g410_i0 PRJNA229468 423 241 1.088542 2.62338622 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 96.3 1.0100000000000002e-21   NR HXY94086.1 2080302 g410 i0 65 5.70124481327801 80 25 99.6 2 240 1 70 146 HXY94086.1 SDR family NAD(P)-dependent oxidoreductase [Acidimicrobiia bacterium] diamond 1374 96.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32128984 32128984 PRJNA229468_S_NODE_998_length_170_cov_2.504132_g985_i0 PRJNA229468 998 170 2.504132 4.2570244 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 63.5 6.67e-11   NR MDH5420796.1 2080302 g985 i0 52.9 0.9 51 24 90 0 169 17 20 70 MDH5420796.1 SRPBCC family protein [Acidimicrobiia bacterium] diamond 153 63.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32146594 32146594 PRJNA229468_S_NODE_718_length_194_cov_1.406897_g705_i0 PRJNA229468 718 194 1.406897 2.72938018 FCB group 1783270 Bacteria Bacteria 58.9 4.09e-9   NR MET0802013.1 2900548 g705 i0 60.5 2.64432989690722 43 16 64.9 1 194 69 83 125 MET0802013.1 SDR family NAD(P)-dependent oxidoreductase [Actinomycetota bacterium] diamond 513 59.3 0.993254637436762 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;