RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA217180" and tax_phylum = "Ascomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA217180 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27706179 27706179 PRJNA217180_P_NODE_13384_length_165_cov_0.879310_g13284_i0 PRJNA217180 13384 165 0.87931 1.4508615 Xylaria venustula 743302 Fungi Fungi 42.7 0.00843   NR KAI1288697.1 743302 g13284 i0 85 0.363636363636364 20 3 36.4 0 163 104 148 167 KAI1288697.1 hypothetical protein F5Y03DRAFT_80559 [Xylaria venustula] diamond 60 42.7 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Xylariales Xylariaceae Xylaria Xylaria venustula
28432053 28432053 PRJNA217180_P_NODE_7106_length_222_cov_0.855491_g7006_i0 PRJNA217180 7106 222 0.855491 1.89919002 Aspergillus californicus 1810905 Fungi Fungi 42.4 0.0411   NR KAL3478070.1 1810905 g7006 i0 34 0.716216216216216 53 35 71.6 0 52 210 1324 1376 KAL3478070.1 ABC-2 type transporter-domain-containing protein [Aspergillus californicus] diamond 159 42.4 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Aspergillus Aspergillus californicus
30484779 30484779 PRJNA217180_P_NODE_7773_length_212_cov_1.245399_g7673_i0 PRJNA217180 7773 212 1.245399 2.64024588 Sclerophora amabilis 2939403 Fungi Fungi 42 0.0465   NR KAI9842613.1 2939403 g7673 i0 40 0.707547169811321 50 30 70.8 0 195 46 206 255 KAI9842613.1 MAG: hypothetical protein M1837_007051 [Sclerophora amabilis] diamond 150 42 1 Eukaryota Opisthokonta Fungi Ascomycota Coniocybomycetes Coniocybales Coniocybaceae Sclerophora Sclerophora amabilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;