RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA217180" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA217180 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26884285 26884285 PRJNA217180_P_NODE_13501_length_165_cov_0.879310_g13401_i0 PRJNA217180 13501 165 0.87931 1.4508615 Thermoplasmata archaeon M8B2D 1933278 Archaea Archaea 83.6 4.1e-17   NR PNX49149.1 1933278 g13401 i0 70.4 0.981818181818182 54 16 98.2 0 165 4 347 400 PNX49149.1 MAG: hypothetical protein BV456_09175 [Thermoplasmata archaeon M8B2D] diamond 162 83.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon M8B2D
28590022 28590022 PRJNA217180_P_NODE_14427_length_163_cov_0.894737_g14327_i0 PRJNA217180 14427 163 0.894737 1.45842131 Methanobacteriota archaeon 2026739 Archaea Archaea 60.1 4e-9   NR MFH0904918.1 2026739 g14327 i0 93.1 0.533742331288344 29 2 53.4 0 162 76 181 209 MFH0904918.1 RNA ligase family protein [Methanobacteriota archaeon] diamond 87 60.1 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32350443 32350443 PRJNA217180_P_NODE_13059_length_166_cov_0.871795_g12959_i0 PRJNA217180 13059 166 0.871795 1.4471797 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 75.9 2.77e-14   NR MEK9697278.1 2163009 g12959 i0 86.5 6.65060240963855 37 5 66.9 0 165 55 708 744 MEK9697278.1 phage tail sheath C-terminal domain-containing protein [Candidatus Poseidoniales archaeon] diamond 1104 75.9 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;