RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA217180" and tax_clade = "Luna-1 subcluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Luna-1 subcluster · 2 ✖

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27706177 27706177 PRJNA217180_P_NODE_12544_length_167_cov_0.864407_g12444_i0 PRJNA217180 12544 167 0.864407 1.44355969 Rhodoluna sp. 1969481 Bacteria Bacteria 105 2.72e-25   NR MBP7835807.1 1969481 g12444 i0 96.4 0.988023952095808 55 2 98.8 0 1 165 238 292 MBP7835807.1 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Rhodoluna sp.] diamond 165 105 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna sp.
28449930 28449930 PRJNA217180_P_NODE_13866_length_164_cov_0.886957_g13766_i0 PRJNA217180 13866 164 0.886957 1.45460948 Rhodoluna 529883 Bacteria Bacteria 107 3.39e-26   NR MBP6087167.1 1969481 g13766 i0 98.1 1.97560975609756 54 1 98.8 0 2 163 240 293 MBP6087167.1 DNA polymerase III subunit alpha [Rhodoluna sp.] diamond 324 107 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;