RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA207719" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA207719 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28842299 28842299 PRJNA207719_P_NODE_1128_length_174_cov_3.000000_g1108_i0 PRJNA207719 1128 174 3 5.22 Clavelina lepadiformis 159417 Chordata Chordata 54.3 8.76e-7   NR CAK8698767.1 159417 g1108 i0 55.6 0.931034482758621 54 23 91.4 1 3 161 122 175 CAK8698767.1 unnamed protein product [Clavelina lepadiformis] diamond 162 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
32791900 32791900 PRJNA207719_P_NODE_600_length_260_cov_3.017316_g580_i0 PRJNA207719 600 260 3.017316 7.8450216 Hipposideros armiger 186990 Chordata Chordata 56.2 7.1e-7   NR XP_019520577.1 186990 g580 i0 38.2 2.94230769230769 89 41 91.2 6 245 9 201 285 XP_019520577.1 PREDICTED: asialoglycoprotein receptor 1-like [Hipposideros armiger] diamond 765 56.6 0.992932862190813 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Hipposideridae Hipposideros Hipposideros armiger

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;