RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA207719" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 3 ✖

bioproject 1

  • PRJNA207719 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29126878 29126878 PRJNA207719_P_NODE_1349_length_150_cov_2.181818_g1329_i0 PRJNA207719 1349 150 2.181818 3.272727 Daucus carota subsp. sativus 79200 Plants Plants 59.7 4.55e-9   NR XP_017243200.1 79200 g1329 i0 61.7 3.7 47 18 94 0 150 10 160 206 XP_017243200.1 nascent polypeptide-associated complex subunit alpha-like protein 2 [Daucus carota subsp. sativus] diamond 555 59.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Apiales Apiaceae Daucus Daucus carota
31228968 31228968 PRJNA207719_P_NODE_1155_length_172_cov_1.797203_g1135_i0 PRJNA207719 1155 172 1.797203 3.09118916 Eukaryota 2759 Plants Plants 67 4.42e-12   NR KAI9191846.1 4023 g1135 i0 56.1 11.9476744186047 57 25 99.4 0 2 172 11 67 KAI9191846.1 hypothetical protein LWI28_014423 [Acer negundo] diamond 2055 67.4 0.99406528189911 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer negundo
31703627 31703627 PRJNA207719_P_NODE_617_length_256_cov_2.713656_g597_i0 PRJNA207719 617 256 2.713656 6.94695936 Ericales 41945 Plants Plants 47.4 5.03e-4   NR XP_057502784.1 165200 g597 i0 39.4 5.49609375 66 39 77.3 1 15 212 42 106 XP_057502784.1 calmodulin-like protein 30 [Actinidia eriantha] diamond 1407 47.8 0.99163179916318 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Actinidiaceae Actinidia Actinidia eriantha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;