RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA207343" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA207343 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30358821 30358821 PRJNA207343_S_NODE_10872_length_157_cov_11.666667_g10335_i0 PRJNA207343 10872 157 11.666667 18.31666719 Jeotgalibaca porci 1868793 Bacteria Bacteria 92.8 2.68e-20   NR WP_373711551.1 1868793 g10335 i0 100 0.936305732484076 49 0 93.6 0 8 154 375 423 WP_373711551.1 relaxase/mobilization nuclease domain-containing protein, partial [Jeotgalibaca porci] diamond 147 92.8 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca porci
31748984 31748984 PRJNA207343_S_NODE_8997_length_183_cov_1.856164_g8460_i0 PRJNA207343 8997 183 1.856164 3.39678012 Jeotgalibaca porci 1868793 Bacteria Bacteria 102 2.45e-24   NR WP_373765566.1 1868793 g8460 i0 89.8 0.967213114754098 59 6 96.7 0 2 178 250 308 WP_373765566.1 replication initiation protein [Jeotgalibaca porci] diamond 177 102 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca Jeotgalibaca porci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;