RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA206070" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA206070 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2331031 2331031 PRJNA206070_S_NODE_3542_length_1177_cov_33.671930_g266_i2 PRJNA206070 3542 1177 33.67193 396.3186161 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 285 5.45e-86   NR RYF11315.1 2026735 g266 i2 55.1 1.79439252336449 236 104 59.6 2 704 3 1 236 RYF11315.1 MAG: hypothetical protein EOO40_03550, partial [Deltaproteobacteria bacterium] diamond 2112 285 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27547883 27547883 PRJNA206070_S_NODE_8904_length_423_cov_2.626943_g7031_i0 PRJNA206070 8904 423 2.626943 11.11196889 Corallococcus silvisoli 2697031 Bacteria Bacteria 111 1.63e-26   NR WP_161665448.1 2697031 g7031 i0 50.4 0.900709219858156 127 62 89.4 1 6 383 86 212 WP_161665448.1 alpha/beta fold hydrolase [Corallococcus silvisoli] diamond 381 111 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus silvisoli
27926803 27926803 PRJNA206070_S_NODE_3965_length_994_cov_34.102403_g266_i4 PRJNA206070 3965 994 34.102403 338.97788582 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 235 8.31e-68   NR RYF11315.1 2026735 g266 i4 53.4 3.89034205231388 223 99 67 3 983 318 100 318 RYF11315.1 MAG: hypothetical protein EOO40_03550, partial [Deltaproteobacteria bacterium] diamond 3867 235 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;