RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA195897" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA195897 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26820942 26820942 PRJNA195897_P_NODE_11941_length_163_cov_0.912281_g11908_i0 PRJNA195897 11941 163 0.912281 1.48701803 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 108 1.14e-25   NR MBL7556853.1 2026715 g11908 i0 96.2 0.975460122699387 53 2 97.5 0 162 4 667 719 MBL7556853.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 159 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27421822 27421822 PRJNA195897_P_NODE_603_length_695_cov_4.232198_g573_i0 PRJNA195897 603 695 4.232198 29.4137761 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 105 7.31e-24   NR MBT6325281.1 2053517 g573 i0 32.5 2.60719424460432 200 128 83.3 4 45 623 10 209 MBT6325281.1 glutathione S-transferase [Bdellovibrionales bacterium] diamond 1812 105 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27516308 27516308 PRJNA195897_P_NODE_6943_length_188_cov_1.870504_g6910_i0 PRJNA195897 6943 188 1.870504 3.51654752 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 79.3 1.21e-17   NR MCB0369232.1 2053517 g6910 i0 80.5 0.654255319148936 41 8 65.4 0 65 187 21 61 MCB0369232.1 hypothetical protein [Bdellovibrionales bacterium] diamond 123 79.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;