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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA195897" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJNA195897 · 31 ✖

analysis 1

  • diamond · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916658 2916658 PRJNA195897_P_NODE_343_length_899_cov_2.531765_g318_i0 PRJNA195897 343 899 2.531765 22.76056735 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 150 1.1e-36   NR MEX0796654.1 2080302 g318 i0 36.5 2.98998887652948 299 164 93.4 9 840 1 275 566 MEX0796654.1 cation-translocating P-type ATPase [Acidimicrobiia bacterium] diamond 2688 150 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
5469312 5469312 PRJNA195897_P_NODE_2445_length_322_cov_1.142857_g2412_i0 PRJNA195897 2445 322 1.142857 3.67999954 root 1 Root_unresolved Root_unresolved 83.2 3.18e-16   NR WP_229870033.1 68254 g2412 i0 56 9.38198757763975 84 32 74.5 3 242 3 11 93 WP_229870033.1 NAD-dependent epimerase/dehydratase family protein [Streptomyces phaeofaciens] diamond 3021 84 0.990476190476191 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces phaeofaciens
11844528 11844528 PRJNA195897_P_NODE_2630_length_307_cov_13.934109_g2597_i0 PRJNA195897 2630 307 13.934109 42.77771463 Profundirhabdus halotolerans 2604685 Bacteria Bacteria 135 3.6e-39   NR MTV28656.1 2604685 g2597 i0 98.6 0.684039087947883 70 1 68.4 0 257 48 4 73 MTV28656.1 hypothetical protein [Profundirhabdus halotolerans] diamond 210 135 1 Bacteria   Bacillati Actinomycetota Nitriliruptoria Nitriliruptorales Nitriliruptoraceae Profundirhabdus Profundirhabdus halotolerans
14395102 14395102 PRJNA195897_P_NODE_912_length_561_cov_1.941406_g881_i0 PRJNA195897 912 561 1.941406 10.89128766 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 212 3.13e-67   NR MCP3885490.1 2021380 g881 i0 66.9 0.807486631016043 151 48 80.7 1 6 458 3 151 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 453 212 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
18906735 18906735 PRJNA195897_P_NODE_12615_length_162_cov_0.920354_g12582_i0 PRJNA195897 12615 162 0.920354 1.49097348 Pseudonocardia nantongensis 1181885 Bacteria Bacteria 71.2 5.35e-13   NR WP_410950058.1 1181885 g12582 i0 87.8 0.759259259259259 41 5 75.9 0 38 160 1 41 WP_410950058.1 SDR family NAD(P)-dependent oxidoreductase [Pseudonocardia nantongensis] diamond 123 71.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia nantongensis
26598792 26598792 PRJNA195897_P_NODE_10641_length_166_cov_0.888889_g10608_i0 PRJNA195897 10641 166 0.888889 1.47555574 Scrofimicrobium appendicitidis 3079930 Bacteria Bacteria 57.4 8.99e-8   NR WP_350258420.1 3079930 g10608 i0 47.4 1.03012048192771 57 28 99.4 1 165 1 543 599 WP_350258420.1 phosphoenolpyruvate carboxykinase (GTP) [Scrofimicrobium appendicitidis] diamond 171 57.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Scrofimicrobium Scrofimicrobium appendicitidis
27200163 27200163 PRJNA195897_P_NODE_6602_length_192_cov_1.958042_g6569_i0 PRJNA195897 6602 192 1.958042 3.7594406399999998 Nonomuraea maritima 683260 Bacteria Bacteria 41.2 0.0482   NR WP_090770336.1 683260 g6569 i0 38.7 0.96875 62 31 90.6 2 175 2 47 105 WP_090770336.1 C40 family peptidase [Nonomuraea maritima] diamond 186 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea maritima
27263700 27263700 PRJNA195897_P_NODE_3083_length_280_cov_1.125541_g3050_i0 PRJNA195897 3083 280 1.125541 3.1515148 Actinocorallia herbida 58109 Bacteria Bacteria 91.7 9.05e-21   NR WP_123670124.1 58109 g3050 i0 47.3 3.9 91 46 97.5 2 275 3 96 184 WP_123670124.1 TerD family protein [Actinocorallia herbida] diamond 1092 91.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinocorallia Actinocorallia herbida
27484762 27484762 PRJNA195897_P_NODE_6023_length_200_cov_0.920530_g5990_i0 PRJNA195897 6023 200 0.92053 1.84106 Streptomyces sp. NPDC 1931 Bacteria Bacteria 41.6 0.0386   NR WP_384652207.1 3346671 g5990 i0 40.4 0.855 57 25 72 3 179 36 10 66 WP_384652207.1 hypothetical protein [Streptomyces sp. NPDC058914] diamond 171 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC058914
28039378 28039378 PRJNA195897_P_NODE_2105_length_351_cov_1.589404_g2072_i0 PRJNA195897 2105 351 1.589404 5.57880804 Solirubrobacter 207599 Bacteria Bacteria 49.3 6.01e-4   NR WP_270045897.1 490573 g2072 i0 27.1 1.64102564102564 96 66 78.6 1 33 308 71 166 WP_270045897.1 cupredoxin domain-containing protein [Solirubrobacter ginsenosidimutans] diamond 576 49.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae Solirubrobacter Solirubrobacter ginsenosidimutans
28116115 28116115 PRJNA195897_P_NODE_11345_length_164_cov_0.904348_g11312_i0 PRJNA195897 11345 164 0.904348 1.48313072 Pseudonocardiaceae bacterium 1873463 Bacteria Bacteria 50.1 3.24e-5   NR MQA07820.1 1873463 g11312 i0 40.4 5.61585365853659 52 31 95.1 0 163 8 274 325 MQA07820.1 alpha/beta fold hydrolase [Pseudonocardiaceae bacterium] diamond 921 50.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae   Pseudonocardiaceae bacterium
28400396 28400396 PRJNA195897_P_NODE_2286_length_334_cov_1.757895_g2253_i0 PRJNA195897 2286 334 1.757895 5.8713693 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 149 6.419999999999998e-43   NR HET9543658.1 2201156 g2253 i0 62.4 5.90119760479042 109 41 97.9 0 331 5 15 123 HET9543658.1 adenylyl-sulfate kinase [Acidimicrobiales bacterium] diamond 1971 149 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28400401 28400401 PRJNA195897_P_NODE_4326_length_230_cov_1.104972_g4293_i0 PRJNA195897 4326 230 1.104972 2.5414356 Actinomycetota bacterium 2900548 Bacteria Bacteria 58.5 7.53e-8   NR MEX2457787.1 2900548 g4293 i0 46.4 2.7 69 35 87.4 1 217 17 51 119 MEX2457787.1 kelch repeat-containing protein [Actinomycetota bacterium] diamond 621 58.5 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28449925 28449925 PRJNA195897_P_NODE_4626_length_223_cov_1.195402_g4593_i0 PRJNA195897 4626 223 1.195402 2.66574646 Actinomycetes 1760 Bacteria Bacteria 62 4.38e-9   NR HWV48372.1 51671 g4593 i0 46.2 3.01345291479821 78 37 98.2 1 219 1 277 354 HWV48372.1 ankyrin repeat domain-containing protein [Microbacterium sp.] diamond 672 62.4 0.993589743589744 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp.
28589997 28589997 PRJNA195897_P_NODE_7807_length_179_cov_1.200000_g7774_i0 PRJNA195897 7807 179 1.2 2.148 Ornithinicoccus hortensis 82346 Bacteria Bacteria 72.8 1.44e-13   NR WP_141786037.1 82346 g7774 i0 78 2.12849162011173 41 9 68.7 0 178 56 216 256 WP_141786037.1 enoyl-CoA hydratase [Ornithinicoccus hortensis] diamond 381 72.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Ornithinicoccus Ornithinicoccus hortensis
29158350 29158350 PRJNA195897_P_NODE_12169_length_163_cov_0.912281_g12136_i0 PRJNA195897 12169 163 0.912281 1.48701803 Rubrobacteraceae bacterium 2740537 Bacteria Bacteria 44.7 0.00227   NR HLM78098.1 2740537 g12136 i0 57.6 0.607361963190184 33 14 60.7 0 118 20 30 62 HLM78098.1 cyclin-dependent kinase inhibitor 3 family protein [Rubrobacteraceae bacterium] diamond 99 44.7 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   Rubrobacteraceae bacterium
29189899 29189899 PRJNA195897_P_NODE_2369_length_327_cov_2.643885_g2336_i0 PRJNA195897 2369 327 2.643885 8.64550395 Rathayibacter rathayi 33887 Bacteria Bacteria 82 8.31e-16   NR WP_097165446.1 33887 g2336 i0 51 1.92660550458716 104 41 95.4 3 10 321 116 209 WP_097165446.1 peptidoglycan-binding protein [Rathayibacter rathayi] diamond 630 82 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter rathayi
29221501 29221501 PRJNA195897_P_NODE_10429_length_166_cov_0.888889_g10396_i0 PRJNA195897 10429 166 0.888889 1.47555574 Rhodococcus sp. (in: high G+C Gram-positive bacteria) 1831 Bacteria Bacteria 77.8 3.49e-17   NR MDZ7932852.1 1831 g10396 i0 79.2 0.867469879518072 48 10 86.7 0 150 7 1 48 MDZ7932852.1 hypothetical protein [Rhodococcus sp. (in: high G+C Gram-positive bacteria)] diamond 144 77.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. (in: high G+C Gram-positive bacteria)
29284254 29284254 PRJNA195897_P_NODE_11609_length_164_cov_0.904348_g11576_i0 PRJNA195897 11609 164 0.904348 1.48313072 Microbacterium laevaniformans 36807 Bacteria Bacteria 92.4 3.99e-20   NR WP_204948049.1 36807 g11576 i0 83.3 0.98780487804878 54 9 98.8 0 1 162 351 404 WP_204948049.1 hypothetical protein [Microbacterium laevaniformans] diamond 162 92.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium laevaniformans
29284259 29284259 PRJNA195897_P_NODE_5209_length_212_cov_1.214724_g5176_i0 PRJNA195897 5209 212 1.214724 2.57521488 Rhodococcus sp. RD6.2 260936 Bacteria Bacteria 60.8 9.18e-9   NR WP_050063137.1 260936 g5176 i0 54.7 1.5 53 24 75 0 171 13 2 54 WP_050063137.1 NADP-dependent oxidoreductase [Rhodococcus sp. RD6.2] diamond 318 60.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. RD6.2
29599951 29599951 PRJNA195897_P_NODE_2870_length_292_cov_1.049383_g2837_i0 PRJNA195897 2870 292 1.049383 3.06419836 Cryptosporangium arvum 80871 Bacteria Bacteria 45.1 0.0103   NR WP_035847687.1 80871 g2837 i0 34.2 1.61301369863014 79 50 80.1 2 291 58 540 617 WP_035847687.1 acyl-CoA dehydrogenase [Cryptosporangium arvum] diamond 471 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Cryptosporangiales Cryptosporangiaceae Cryptosporangium Cryptosporangium arvum
29884560 29884560 PRJNA195897_P_NODE_10971_length_165_cov_0.896552_g10938_i0 PRJNA195897 10971 165 0.896552 1.4793108 Brachybacterium sacelli 173364 Bacteria Bacteria 41.6 0.0345   NR WP_209900256.1 173364 g10938 i0 46.5 0.781818181818182 43 22 76.4 1 22 147 174 216 WP_209900256.1 FAD-dependent monooxygenase [Brachybacterium sacelli] diamond 129 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium sacelli
29997108 29997108 PRJNA195897_P_NODE_4951_length_216_cov_1.556886_g4918_i0 PRJNA195897 4951 216 1.556886 3.36287376 Streptomyces 1883 Bacteria Bacteria 42 0.0482   NR WP_033894882.1 1883 g4918 i0 33.9 1.625 59 38 80.6 1 3 176 33 91 WP_033894882.1 MULTISPECIES: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Streptomyces] diamond 351 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
30547841 30547841 PRJNA195897_P_NODE_11873_length_163_cov_0.912281_g11840_i0 PRJNA195897 11873 163 0.912281 1.48701803 Gordonia 2053 Bacteria Bacteria 95.1 1.95e-21   NR WP_064861270.1 2053 g11840 i0 100 0.828220858895706 45 0 82.8 0 2 136 337 381 WP_064861270.1 MULTISPECIES: citrate/2-methylcitrate synthase [Gordonia] diamond 135 95.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia  
30579234 30579234 PRJNA195897_P_NODE_153_length_1219_cov_3.845299_g140_i0 PRJNA195897 153 1219 3.845299 46.87419481 Angustibacter sp. Root456 1736539 Bacteria Bacteria 310 2.2699999999999997e-99   NR WP_056679390.1 1736539 g140 i0 47.5 9.43068088597211 343 176 84.4 2 1144 116 2 340 WP_056679390.1 NAD(P)-dependent alcohol dehydrogenase [Angustibacter sp. Root456] diamond 11496 310 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Angustibacter Angustibacter sp. Root456
30642502 30642502 PRJNA195897_P_NODE_10353_length_166_cov_0.888889_g10320_i0 PRJNA195897 10353 166 0.888889 1.47555574 Mycobacteriales bacterium 1957017 Bacteria Bacteria 86.7 3.22e-18   NR HEV7208975.1 1957017 g10320 i0 80 0.993975903614458 55 11 99.4 0 166 2 266 320 HEV7208975.1 acyl-CoA dehydrogenase family protein [Mycobacteriales bacterium] diamond 165 86.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales     Mycobacteriales bacterium
30691974 30691974 PRJNA195897_P_NODE_10773_length_165_cov_1.344828_g10740_i0 PRJNA195897 10773 165 1.344828 2.2189662 root 1 Root_unresolved Root_unresolved 42.7 0.0134   NR HEX8067016.1 2732252 g10740 i0 33.3 3.92727272727273 54 36 98.2 0 4 165 179 232 HEX8067016.1 hypothetical protein [Thermoleophilaceae bacterium] diamond 648 43.1 0.990719257540603 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium
31717442 31717442 PRJNA195897_P_NODE_11957_length_163_cov_0.912281_g11924_i0 PRJNA195897 11957 163 0.912281 1.48701803 Dietzia maris 37915 Bacteria Bacteria 41.2 0.0302   NR WP_301163068.1 37915 g11924 i0 69 0.533742331288344 29 4 46 2 74 148 11 38 WP_301163068.1 M20/M25/M40 family metallo-hydrolase [Dietzia maris] diamond 87 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Dietziaceae Dietzia Dietzia maris
32033856 32033856 PRJNA195897_P_NODE_7718_length_180_cov_1.190840_g7685_i0 PRJNA195897 7718 180 1.19084 2.143512 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 46.2 9.39e-4   NR HEX6301131.1 2080302 g7685 i0 40.7 1.98333333333333 59 34 96.7 1 175 2 166 224 HEX6301131.1 CHRD domain-containing protein [Acidimicrobiia bacterium] diamond 357 46.2 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32305027 32305027 PRJNA195897_P_NODE_10319_length_166_cov_1.307692_g10286_i0 PRJNA195897 10319 166 1.307692 2.17076872 root 1 Root_unresolved Root_unresolved 45.8 0.00108   NR WP_318296768.1 47990 g10286 i0 48.1 1.87951807228916 52 27 94 0 159 4 319 370 WP_318296768.1 sugar porter family MFS transporter [Kutzneria viridogrisea] diamond 312 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kutzneria Kutzneria viridogrisea
32558152 32558152 PRJNA195897_P_NODE_5359_length_209_cov_1.837500_g5326_i0 PRJNA195897 5359 209 1.8375 3.840375 Bacillati 1783272 Bacteria Bacteria 55.5 6.66e-7   NR MFD0855074.1 1819600 g5326 i0 60.9 4.99521531100478 46 16 66 1 208 71 173 216 MFD0855074.1 4-hydroxyphenylpyruvate dioxygenase [Actinomadura adrarensis] diamond 1044 55.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura adrarensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;