RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA193544" and tax_phylum = "Bacteroidota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA193544 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27295206 27295206 PRJNA193544_S_NODE_1003_length_250_cov_736.443439_g988_i0 PRJNA193544 1003 250 736.443439 1841.1085975 Sphingobacterium chuzhouense 1742264 Bacteria Bacteria 46.2 8.71e-4   NR MBD1423946.1 1742264 g988 i0 65.4 0.312 26 9 31.2 0 52 129 82 107 MBD1423946.1 hypothetical protein [Sphingobacterium chuzhouense] diamond 78 46.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Sphingobacterium Sphingobacterium chuzhouense
27990021 27990021 PRJNA193544_S_NODE_1625_length_207_cov_1.848315_g1610_i0 PRJNA193544 1625 207 1.848315 3.82601205 Mucilaginibacter sp. 1882438 Bacteria Bacteria 72.4 1.16e-14   NR MDN5289622.1 1882438 g1610 i0 62.1 0.840579710144927 58 22 84.1 0 9 182 35 92 MDN5289622.1 hypothetical protein [Mucilaginibacter sp.] diamond 174 72.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;