RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA193544" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA193544 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30421858 30421858 PRJNA193544_S_NODE_1973_length_192_cov_23975.503067_g1958_i0 PRJNA193544 1973 192 23975.503067 46032.96588864 Microbacterium helvum 2773713 Bacteria Bacteria 42 0.0238   NR WP_191173023.1 2773713 g1958 i0 45.5 0.6875 44 23 67.2 1 153 25 49 92 WP_191173023.1 Mov34/MPN/PAD-1 family protein [Microbacterium helvum] diamond 132 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium helvum
31970473 31970473 PRJNA193544_S_NODE_2838_length_164_cov_13.851852_g2823_i0 PRJNA193544 2838 164 13.851852 22.71703728 Corynebacterium hadale 2026255 Bacteria Bacteria 41.6 0.0329   NR WP_095535840.1 2026255 g2823 i0 58.8 0.621951219512195 34 13 60.4 1 52 150 280 313 WP_095535840.1 multicopper oxidase domain-containing protein [Corynebacterium hadale] diamond 102 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium hadale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;