RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA193544" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA193544 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26662127 26662127 PRJNA193544_S_NODE_921_length_259_cov_3.156522_g906_i0 PRJNA193544 921 259 3.156522 8.17539198 Planctomycetales bacterium 2053591 Bacteria Bacteria 92 1.55e-22   NR MCX7410675.1 2053591 g906 i0 83.9 0.648648648648649 56 9 64.9 0 34 201 1 56 MCX7410675.1 Flp family type IVb pilin [Planctomycetales bacterium] diamond 168 92 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium
29537020 29537020 PRJNA193544_S_NODE_1230_length_231_cov_16.599010_g1215_i0 PRJNA193544 1230 231 16.59901 38.3437131 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 42.7 0.0318   NR MCA9060089.1 2026779 g1215 i0 36.4 1 77 49 100 0 231 1 58 134 MCA9060089.1 hypothetical protein [Planctomycetaceae bacterium] diamond 231 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
30990359 30990359 PRJNA193544_S_NODE_1494_length_214_cov_3.410811_g1479_i0 PRJNA193544 1494 214 3.410811 7.29913554 Planctomycetales bacterium 2053591 Bacteria Bacteria 95.9 2.5299999999999998e-24   NR MCX7410675.1 2053591 g1479 i0 86 0.799065420560748 57 8 79.9 0 184 14 1 57 MCX7410675.1 Flp family type IVb pilin [Planctomycetales bacterium] diamond 171 95.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;