RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA193544" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA193544 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29473621 29473621 PRJNA193544_S_NODE_2090_length_188_cov_7.773585_g2075_i0 PRJNA193544 2090 188 7.773585 14.6143398 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 75.9 5.77e-16   NR HRN86953.1 2099670 g2075 i0 77.4 0.845744680851064 53 12 84.6 0 161 3 51 103 HRN86953.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 159 75.9 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
29537022 29537022 PRJNA193544_S_NODE_3230_length_155_cov_7.992063_g3215_i0 PRJNA193544 3230 155 7.992063 12.38769765 Candidatus Peribacteria bacterium RIFCSPLOWO2_ 2053688 Bacteria Bacteria 55.5 2.09e-8   NR OGJ69802.1 1801929 g3215 i0 66.7 0.812903225806452 42 14 81.3 0 28 153 26 67 OGJ69802.1 MAG: hypothetical protein A3H90_02195 [Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36] diamond 126 55.5 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36
30705731 30705731 PRJNA193544_S_NODE_2194_length_184_cov_4.645161_g2179_i0 PRJNA193544 2194 184 4.645161 8.54709624 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 58.2 3.4e-9   NR HRN86952.1 2099670 g2179 i0 87.1 0.505434782608696 31 4 50.5 0 95 3 1 31 HRN86952.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 93 58.2 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;