RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA188516" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29000665 29000665 PRJNA188516_P_NODE_5508_length_164_cov_0.904348_g5458_i0 PRJNA188516 5508 164 0.904348 1.48313072 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 101 1.24e-26   NR XP_044569069.1 5763 g5458 i0 90.7 0.98780487804878 54 5 98.8 0 2 163 5 58 XP_044569069.1 uncharacterized protein FDP41_007533 [Naegleria fowleri] diamond 162 101 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
31147771 31147771 PRJNA188516_P_NODE_4195_length_169_cov_0.866667_g4145_i0 PRJNA188516 4195 169 0.866667 1.46466723 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 110 1.68e-26   NR XP_002679243.1 5762 g4145 i0 91.1 0.994082840236686 56 5 99.4 0 2 169 438 493 XP_002679243.1 uncharacterized protein NAEGRDRAFT_350, partial [Naegleria gruberi] diamond 168 110 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;