RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA188516" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28368713 28368713 PRJNA188516_P_NODE_4746_length_167_cov_0.881356_g4696_i0 PRJNA188516 4746 167 0.881356 1.47186452 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 106 4.12e-27   NR RKV92962.1 1917697 g4696 i0 98 0.898203592814371 50 1 89.8 0 18 167 1 50 RKV92962.1 MAG: hypothetical protein D8G53_13555, partial [Candidatus Saccharimonas sp.] diamond 150 106 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
31179459 31179459 PRJNA188516_P_NODE_5535_length_164_cov_0.904348_g5485_i0 PRJNA188516 5535 164 0.904348 1.48313072 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 41.6 0.033   NR HUR45991.1 2973664 g5485 i0 37.3 0.932926829268293 51 31 91.5 1 9 158 66 116 HUR45991.1 vitamin K epoxide reductase family protein [Candidatus Saccharimonadales bacterium] diamond 153 41.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;