RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA188516" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1055226 1055226 PRJNA188516_P_NODE_5281_length_165_cov_0.896552_g5231_i0 PRJNA188516 5281 165 0.896552 1.4793108 Opisthokonta 33154 Annelida Annelida 70.9 1.58e-12   NR CAH1796208.1 6347 g5231 i0 60.4 12.6181818181818 48 19 87.3 0 144 1 10 57 CAH1796208.1 unnamed protein product [Owenia fusiformis] diamond 2082 70.9 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
31418906 31418906 PRJNA188516_P_NODE_4996_length_166_cov_0.888889_g4946_i0 PRJNA188516 4996 166 0.888889 1.47555574 root 1 Root_unresolved Root_unresolved 77.4 7.88e-15   NR KAK2155374.1 53620 g4946 i0 54.5 15.9759036144578 55 25 99.4 0 1 165 97 151 KAK2155374.1 hypothetical protein LSH36_242g08034 [Paralvinella palmiformis] diamond 2652 77.4 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;