RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA188516" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA188516 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27895093 27895093 PRJNA188516_P_NODE_5505_length_164_cov_0.904348_g5455_i0 PRJNA188516 5505 164 0.904348 1.48313072 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 105 1.07e-25   NR WP_294096157.1 527638 g5455 i0 94.3 0.969512195121951 53 3 97 0 3 161 163 215 WP_294096157.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 159 105 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
28052995 28052995 PRJNA188516_P_NODE_5405_length_164_cov_0.904348_g5355_i0 PRJNA188516 5405 164 0.904348 1.48313072 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 106 1.74e-25   NR WP_294093648.1 527638 g5355 i0 96.3 0.98780487804878 54 2 98.8 0 1 162 37 90 WP_294093648.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [uncultured Cetobacterium sp.] diamond 162 106 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
32160552 32160552 PRJNA188516_P_NODE_5498_length_164_cov_0.904348_g5448_i0 PRJNA188516 5498 164 0.904348 1.48313072 Cetobacterium sp. NK 2071632 Bacteria Bacteria 106 2.57e-28   NR WP_256690022.1 2993530 g5448 i0 90.6 0.969512195121951 53 5 97 0 3 161 54 106 WP_256690022.1 cell division protein SepF [Cetobacterium sp. NK01] diamond 159 106 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. NK01
32350411 32350411 PRJNA188516_P_NODE_3739_length_175_cov_0.992063_g3689_i0 PRJNA188516 3739 175 0.992063 1.73611025 unclassified Cetobacterium 2630983 Bacteria Bacteria 56.6 2.84e-8   NR WP_047384607.1 2630983 g3689 i0 71.8 0.668571428571429 39 11 66.9 0 157 41 70 108 WP_047384607.1 MULTISPECIES: hypothetical protein [unclassified Cetobacterium] diamond 117 56.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;