RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA188516" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA188516 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916496 2916496 PRJNA188516_P_NODE_5003_length_166_cov_0.888889_g4953_i0 PRJNA188516 5003 166 0.888889 1.47555574 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 102 5.07e-24   NR MBL8848500.1 2026779 g4953 i0 96.4 0.993975903614458 55 2 99.4 0 166 2 191 245 MBL8848500.1 DUF1501 domain-containing protein [Planctomycetaceae bacterium] diamond 165 102 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
28779135 28779135 PRJNA188516_P_NODE_5787_length_163_cov_0.912281_g5737_i0 PRJNA188516 5787 163 0.912281 1.48701803 Phycisphaerales bacterium 2052180 Bacteria Bacteria 75.9 2.66e-14   NR HMN42288.1 2052180 g5737 i0 58.5 0.975460122699387 53 22 97.5 0 5 163 1358 1410 HMN42288.1 GC-type dockerin domain-anchored protein [Phycisphaerales bacterium] diamond 159 75.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
30358780 30358780 PRJNA188516_P_NODE_5992_length_162_cov_0.920354_g5942_i0 PRJNA188516 5992 162 0.920354 1.49097348 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 62.8 1.04e-9   NR MDB5334442.1 2026779 g5942 i0 58 0.925925925925926 50 21 92.6 0 155 6 2386 2435 MDB5334442.1 hypothetical protein [Planctomycetaceae bacterium] diamond 150 62.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;