RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA177642" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA177642 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26978988 26978988 PRJNA177642_P_NODE_17642_length_166_cov_1.051095_g16417_i0 PRJNA177642 17642 166 1.051095 1.7448177 Myxococcales bacterium 2026763 Bacteria Bacteria 84.3 2.74e-17   NR NLY95282.1 2026763 g16417 i0 76.4 0.993975903614458 55 13 99.4 0 165 1 39 93 NLY95282.1 MCE family protein [Myxococcales bacterium] diamond 165 84.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27105356 27105356 PRJNA177642_P_NODE_13102_length_276_cov_3.230769_g11877_i0 PRJNA177642 13102 276 3.230769 8.91692244 Hyalangium sp. 2028555 Bacteria Bacteria 44.3 0.0122   NR HVG59815.1 2028555 g11877 i0 36.3 0.869565217391304 80 50 85.9 1 242 6 95 174 HVG59815.1 class I SAM-dependent methyltransferase [Hyalangium sp.] diamond 240 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
29396966 29396966 PRJNA177642_P_NODE_17229_length_168_cov_1.014388_g16004_i0 PRJNA177642 17229 168 1.014388 1.70417184 Polyangium 55 Bacteria Bacteria 66.2 6.77e-11   NR WP_136930181.1 889272 g16004 i0 61.1 2.91071428571429 54 20 96.4 1 166 5 483 535 WP_136930181.1 cytochrome C peroxidase [Polyangium fumosum] diamond 489 66.6 0.993993993993994 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium fumosum
30168532 30168532 PRJNA177642_P_NODE_9812_length_362_cov_82.777778_g8591_i0 PRJNA177642 9812 362 82.777778 299.65555636 Corallococcus sp. AB 1898750 Bacteria Bacteria 65.9 1.18e-11   NR WP_147477341.1 2316718 g8591 i0 68.9 0.37292817679558 45 14 37.3 0 353 219 15 59 WP_147477341.1 hypothetical protein [Corallococcus sp. AB038B] diamond 135 65.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AB038B
31829938 31829938 PRJNA177642_P_NODE_16457_length_172_cov_1.006993_g15232_i0 PRJNA177642 16457 172 1.006993 1.73202796 Pyxidicoccus 224458 Bacteria Bacteria 68.6 8.7e-12   NR MDQ3265555.1 2818507 g15232 i0 71.9 2.96511627906977 57 15 99.4 1 2 172 104 159 MDQ3265555.1 NAD(P)H-quinone oxidoreductase [Myxococcota bacterium] diamond 510 68.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;