RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA177642" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA177642 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14394634 14394634 PRJNA177642_P_NODE_18852_length_158_cov_2.209302_g17627_i0 PRJNA177642 18852 158 2.209302 3.49069716 root 1 Root_unresolved Root_unresolved 97.4 5.56e-24   NR XP_067184550.1 310047 g17627 i0 82.7 3.9493670886076 52 9 98.7 0 2 157 106 157 XP_067184550.1 uncharacterized protein FG379_000932 [Cryptosporidium bovis] diamond 624 97.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
26630800 26630800 PRJNA177642_P_NODE_11241_length_330_cov_0.800664_g10016_i0 PRJNA177642 11241 330 0.800664 2.6421912 Porospora cf. gigantea A 2853593 SAR_Eukaryotes SAR_Eukaryotes 42 0.0488   NR XP_067808354.1 2853593 g10016 i0 56.7 0.272727272727273 30 13 27.3 0 91 2 60 89 XP_067808354.1 MAG: uncharacterized protein KVP18_004117 [Porospora cf. gigantea A] diamond 90 42 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Porosporidae Porospora Porospora cf. gigantea A

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;