RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA177642" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA177642 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28179097 28179097 PRJNA177642_P_NODE_17046_length_169_cov_1.000000_g15821_i0 PRJNA177642 17046 169 1 1.69 Acidobacteriota bacterium 1978231 Bacteria Bacteria 86.7 4.66e-18   NR MCX6545743.1 1978231 g15821 i0 74.5 2.92899408284024 55 14 97.6 0 5 169 501 555 MCX6545743.1 DNA methylase [Acidobacteriota bacterium] diamond 495 86.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32128930 32128930 PRJNA177642_P_NODE_18558_length_162_cov_1.082707_g17333_i0 PRJNA177642 18558 162 1.082707 1.75398534 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 63.2 7.57e-10   NR MCY7348361.1 2283092 g17333 i0 52.8 1.96296296296296 53 25 98.1 0 161 3 88 140 MCY7348361.1 tetratricopeptide repeat protein [Pyrinomonadaceae bacterium] diamond 318 63.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;